| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474676
Identifier: 113474676
GI number: 113474676
Start: 1355187
End: 1355828
Strand: Direct
Name: 113474676
Synonym: Tery_0856
Alternate gene names: NA
Gene position: 1355187-1355828 (Clockwise)
Preceding gene: 113474675
Following gene: 113474677
Centisome position: 17.49
GC content: 29.44
Gene sequence:
>642_bases ATGAAGCTTTATCAGTTAACAACAACAGCAATAATTACTTTAGTTTCTATTATTAGTAATCCTCTAGAAAGTTTTAGTCA AAAGAAGTTTTTTATTCCTCCAGCTTTAGGGCAAGATTCGTGGGTTAATTCTCCTACCCGAATAGAAATCACAAAAAAAA CATCATTACAAGAAATTAACTATAAATTAATAGAAATAGATACTATGAGAAAATATAACGCGCCTGTATCCGAAGCAGAT AAAAAAGCTATTATAGAAGACTTAGAAAAAATTGAAGCCCTGAGAAAAAGTCGTAATTTAATTATTAATTATATATGTTC AGGCTATAATATTGCTGAAGCTTGGGAAAAGGCAGTTAAAGCTTGTGAAAGAAGCTTAAGAAAGGGAGATGATCCAGATA TATTTCACCCAATACATGAAGCTTACTTTGGTGCCAAAAAATACAACAAAGCAATTAATTCTCTGAAACAGTCTCTAAAT AGTGATAATAATAATTATCCTTTTGTCTCATATCAAAAACTAGGATTAATGTATTTTAAATTAGGCGATTATCCTGAAGC AATTAGGCAATATCAAAAAGCAGTAGAATCAATAAAAAAATCCTATGAAGGATATAATTGTGAAGCTTGCATTCATGATT AA
Upstream 100 bases:
>100_bases GCTCAATTTTGTAGAAGTCTATTTCAGAAACCCTAATAACTTATATTGTGTTCAGCTATATTCTGATCAATTATCTTTTC AATTTAAAGGAGTGTTAATT
Downstream 100 bases:
>100_bases TTTGCTTCTAATCTTTCTTTAATTCAGTCACATTTTGGATTTTCATTACTCCAAAATGGTAAAATAGATGAAGCTGAGAA AAAGTTTTTAGAGGCTATGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEINYKLIEIDTMRKYNAPVSEAD KKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVKACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLN SDNNNYPFVSYQKLGLMYFKLGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD
Sequences:
>Translated_213_residues MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEINYKLIEIDTMRKYNAPVSEAD KKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVKACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLN SDNNNYPFVSYQKLGLMYFKLGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD >Mature_213_residues MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEINYKLIEIDTMRKYNAPVSEAD KKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVKACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLN SDNNNYPFVSYQKLGLMYFKLGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24511; Mature: 24511
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEIN CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHC YKLIEIDTMRKYNAPVSEADKKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVK EEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH ACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLNSDNNNYPFVSYQKLGLMYFK HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCEEE LGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC >Mature Secondary Structure MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEIN CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHC YKLIEIDTMRKYNAPVSEADKKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVK EEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH ACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLNSDNNNYPFVSYQKLGLMYFK HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCEEE LGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA