| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474642
Identifier: 113474642
GI number: 113474642
Start: 1291960
End: 1294113
Strand: Direct
Name: 113474642
Synonym: Tery_0814
Alternate gene names: NA
Gene position: 1291960-1294113 (Clockwise)
Preceding gene: 113474640
Following gene: 113474643
Centisome position: 16.67
GC content: 38.81
Gene sequence:
>2154_bases ATGGATAAGAATACACCAATCTATATAGCTATTTCTGGGGGTGGGTTTCATTCCCATACAGCTATGTCTGCTTGGATTAG TGGAATTTTGCACCATTCAGAACTGGAAAGTTTAGAACAAATCTTTGAGAATGTACGTGGAATTAGTGCTAATTCCGGTG GTAGCTGGTTCATGTCCCATTTGGGTTATTCTAATGCTTTTGTGAAATCTCTGCTTGAAGACAGTCAATCAGAGAAAAGT ACCTGGTCATCTTCAGGTTATTTGGGAAAAATGGGAGAAAGTTTTTTCTCCAAAGATGACGAAAAAGCTTCTGACATGTC AATCTTCTCGCCGGTGAAAATTGAGACATTTCTTGCCAAATACATTGACTTGTTCAACGTTTATGCAGAAATTTTCCCCA ATGGAAATAGAAGATGGCATCAGTTTGTCACCACCAAGGTCTATGAGCCTCTCGAAAAACTGGGAAATGCAGAAAATGGT TTTGAAACTATGAAAGGCAAAAAGCTAAGCGAGACGAATGATCGCCTTCCATGGTTCAGAGAAAAAGACTTTGTCATTGC TGCAGGTCTTTTGAATTCCAAGGTGGTTCTTCATGCAACTGGGGGGTTGGGTAGTACAAATCAAGTCTACTCGGTCAATT CGGCTGATGGCTCAAAATTGAGAAATTTTGTCCCCATGTGTTTATCCGGTGTAGCAAACGGTCGAAAAGCAGCACCTGTA TTTGTGAGTGGTCCACAAGAGGTTATATATAGTGAAGAGTCGAAATGGAGAATCCCATTGACTGCAAACCATCCCCAAAA CTTAAACTTGTTGGATGCAACTATTGCATCTTCTTCTGCTATTGCTTTTTTAGCGAGTGAAAGTAGCATAGGAGAAATGA TACCAAGTCTTAACGAAGGTCTGACTTTTGAATGGATAAGTTATCAGGAAGCAGATTTTGCTCCCCCAATAAGGTTTGGA AATGATCGCATCGAAATATTAAAAACTCTTGAGCGTGCTAGTTACGATGAATTTGCGAATCAAAAAATGGCCAGGGTAGC AGATGGGGGATATCTTGATAACACTTCAGTTGTCTTCCAACTACGTCATATGAAAGAAAATGGTGATTTAAAAGATGGCT TTCATCTGGTTCTATTTGTGAATGGTTCCGACGAAGGTGTCAAATACCATGGTTATGAAATGAATGTAGGTATTGCTACA CTATTTGGGCATGATGGACTTTCCGAAGCTCACAGAGCTGAGAGAGTGAAAAAAGGAGAAAAAATTCAACCTGAGGAAGG TTCTATATGGAACAGTCCTTTTAGCGATCTTTGTATGGAAATTCCCTCGCCCCATGTTTTTGAGACTGAACCGTTGGAAA ATAATACAGCCATATCAATGTGGAATTGGAAAAGCAAGGATGAAAAAATCTCGTTGCAGGCTCGTAAGATACCTGTTACT ACAGTAGAAAACAAAACCTATGGAATCTCTGCTGGGGTAATGGGTACCATTTATATTTTTGAGGTGACACAACCTGAATC TTTTCCTATGCCAACGCACAGAGATATACTAGAAACCTATGAATATTTATTTGAAACGATTAGAAACGAGGCTTGTGCAA AAAACCAAGCATTGTCCCATCTTAAGGAGGCATTGGCACTAAAGATAAACATCCCAACAGATCCGCATCCGATCCCTGAG ATTGTTAAGAAGAACGACAATATTGTGCTTCAATGGAATAGTGATGGTAGTTATCTATCTTCCTCAGATTCTGGTTTTAG ATATTATTTGGCTACATTAAACCGATTAAAAAGTTACGCTAAAATACATAAGTTTGATAATATGTATAGTGATAACCTGC ACCATGGGGACCTAGTTCGTATAAAAACAACAGAGCAATTCAAGGGTATATGGAACCAACGCAAGCTTCTTGGTGCTTTT GCTAATAGTTATGAATTGTACTACTGGAGTGATTCTGGTGACAAGACTAATTGGATTATTGAAAAGGCTGCTGGTACAGC CCAAGAAACGGAAATTGCCTATGGTGAGAAAGTTTATATTAAGAATAAGTCTTATAATCAGTATCTGGTGTTTGCCAAGG ATGGTTATTTAACAACCAAAAAAATACAAAATCCCGGAGATGAACATACATGGGTTATTCATAGGCCTGAATAA
Upstream 100 bases:
>100_bases GCTAAATCGCTAAATCGCTAAATAGATAAATCTTTATGGGTGTATATATAGTGTCTTTGCGTAAGTCCTGTTTATAAGAT AAGGAGAAACAAATATTATT
Downstream 100 bases:
>100_bases AAGCTTAAAGCACTTTTATGATCGCTTTTATAAATCTAAATACTTACTCAAGCTTTCCCTTCTTGCCGTAATACATTTTG TCGTGAGGAATGTAGGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 717; Mature: 717
Protein sequence:
>717_residues MDKNTPIYIAISGGGFHSHTAMSAWISGILHHSELESLEQIFENVRGISANSGGSWFMSHLGYSNAFVKSLLEDSQSEKS TWSSSGYLGKMGESFFSKDDEKASDMSIFSPVKIETFLAKYIDLFNVYAEIFPNGNRRWHQFVTTKVYEPLEKLGNAENG FETMKGKKLSETNDRLPWFREKDFVIAAGLLNSKVVLHATGGLGSTNQVYSVNSADGSKLRNFVPMCLSGVANGRKAAPV FVSGPQEVIYSEESKWRIPLTANHPQNLNLLDATIASSSAIAFLASESSIGEMIPSLNEGLTFEWISYQEADFAPPIRFG NDRIEILKTLERASYDEFANQKMARVADGGYLDNTSVVFQLRHMKENGDLKDGFHLVLFVNGSDEGVKYHGYEMNVGIAT LFGHDGLSEAHRAERVKKGEKIQPEEGSIWNSPFSDLCMEIPSPHVFETEPLENNTAISMWNWKSKDEKISLQARKIPVT TVENKTYGISAGVMGTIYIFEVTQPESFPMPTHRDILETYEYLFETIRNEACAKNQALSHLKEALALKINIPTDPHPIPE IVKKNDNIVLQWNSDGSYLSSSDSGFRYYLATLNRLKSYAKIHKFDNMYSDNLHHGDLVRIKTTEQFKGIWNQRKLLGAF ANSYELYYWSDSGDKTNWIIEKAAGTAQETEIAYGEKVYIKNKSYNQYLVFAKDGYLTTKKIQNPGDEHTWVIHRPE
Sequences:
>Translated_717_residues MDKNTPIYIAISGGGFHSHTAMSAWISGILHHSELESLEQIFENVRGISANSGGSWFMSHLGYSNAFVKSLLEDSQSEKS TWSSSGYLGKMGESFFSKDDEKASDMSIFSPVKIETFLAKYIDLFNVYAEIFPNGNRRWHQFVTTKVYEPLEKLGNAENG FETMKGKKLSETNDRLPWFREKDFVIAAGLLNSKVVLHATGGLGSTNQVYSVNSADGSKLRNFVPMCLSGVANGRKAAPV FVSGPQEVIYSEESKWRIPLTANHPQNLNLLDATIASSSAIAFLASESSIGEMIPSLNEGLTFEWISYQEADFAPPIRFG NDRIEILKTLERASYDEFANQKMARVADGGYLDNTSVVFQLRHMKENGDLKDGFHLVLFVNGSDEGVKYHGYEMNVGIAT LFGHDGLSEAHRAERVKKGEKIQPEEGSIWNSPFSDLCMEIPSPHVFETEPLENNTAISMWNWKSKDEKISLQARKIPVT TVENKTYGISAGVMGTIYIFEVTQPESFPMPTHRDILETYEYLFETIRNEACAKNQALSHLKEALALKINIPTDPHPIPE IVKKNDNIVLQWNSDGSYLSSSDSGFRYYLATLNRLKSYAKIHKFDNMYSDNLHHGDLVRIKTTEQFKGIWNQRKLLGAF ANSYELYYWSDSGDKTNWIIEKAAGTAQETEIAYGEKVYIKNKSYNQYLVFAKDGYLTTKKIQNPGDEHTWVIHRPE >Mature_717_residues MDKNTPIYIAISGGGFHSHTAMSAWISGILHHSELESLEQIFENVRGISANSGGSWFMSHLGYSNAFVKSLLEDSQSEKS TWSSSGYLGKMGESFFSKDDEKASDMSIFSPVKIETFLAKYIDLFNVYAEIFPNGNRRWHQFVTTKVYEPLEKLGNAENG FETMKGKKLSETNDRLPWFREKDFVIAAGLLNSKVVLHATGGLGSTNQVYSVNSADGSKLRNFVPMCLSGVANGRKAAPV FVSGPQEVIYSEESKWRIPLTANHPQNLNLLDATIASSSAIAFLASESSIGEMIPSLNEGLTFEWISYQEADFAPPIRFG NDRIEILKTLERASYDEFANQKMARVADGGYLDNTSVVFQLRHMKENGDLKDGFHLVLFVNGSDEGVKYHGYEMNVGIAT LFGHDGLSEAHRAERVKKGEKIQPEEGSIWNSPFSDLCMEIPSPHVFETEPLENNTAISMWNWKSKDEKISLQARKIPVT TVENKTYGISAGVMGTIYIFEVTQPESFPMPTHRDILETYEYLFETIRNEACAKNQALSHLKEALALKINIPTDPHPIPE IVKKNDNIVLQWNSDGSYLSSSDSGFRYYLATLNRLKSYAKIHKFDNMYSDNLHHGDLVRIKTTEQFKGIWNQRKLLGAF ANSYELYYWSDSGDKTNWIIEKAAGTAQETEIAYGEKVYIKNKSYNQYLVFAKDGYLTTKKIQNPGDEHTWVIHRPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80765; Mature: 80765
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKNTPIYIAISGGGFHSHTAMSAWISGILHHSELESLEQIFENVRGISANSGGSWFMSH CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH LGYSNAFVKSLLEDSQSEKSTWSSSGYLGKMGESFFSKDDEKASDMSIFSPVKIETFLAK CCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH YIDLFNVYAEIFPNGNRRWHQFVTTKVYEPLEKLGNAENGFETMKGKKLSETNDRLPWFR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCC EKDFVIAAGLLNSKVVLHATGGLGSTNQVYSVNSADGSKLRNFVPMCLSGVANGRKAAPV CCCEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCE FVSGPQEVIYSEESKWRIPLTANHPQNLNLLDATIASSSAIAFLASESSIGEMIPSLNEG EECCCHHHHCCCCCCEEEEEECCCCCCCCEEEHHHCCCCEEEEEECCCHHHHHHHHHCCC LTFEWISYQEADFAPPIRFGNDRIEILKTLERASYDEFANQKMARVADGGYLDNTSVVFQ CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEE LRHMKENGDLKDGFHLVLFVNGSDEGVKYHGYEMNVGIATLFGHDGLSEAHRAERVKKGE EEECCCCCCCCCCEEEEEEEECCCCCEEEECEEECCEEEEEECCCCHHHHHHHHHHHCCC KIQPEEGSIWNSPFSDLCMEIPSPHVFETEPLENNTAISMWNWKSKDEKISLQARKIPVT CCCCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCCCEEEEECCCCCCCEEEEEEEECEEE TVENKTYGISAGVMGTIYIFEVTQPESFPMPTHRDILETYEYLFETIRNEACAKNQALSH EECCCCEEEECCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKEALALKINIPTDPHPIPEIVKKNDNIVLQWNSDGSYLSSSDSGFRYYLATLNRLKSYA HHHHEEEEEECCCCCCCCHHHHCCCCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHH KIHKFDNMYSDNLHHGDLVRIKTTEQFKGIWNQRKLLGAFANSYELYYWSDSGDKTNWII HHHHHHCHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEE EKAAGTAQETEIAYGEKVYIKNKSYNQYLVFAKDGYLTTKKIQNPGDEHTWVIHRPE EECCCCCCCCEECCCCEEEEECCCCCEEEEEEECCEEEEHHCCCCCCCCCEEEECCC >Mature Secondary Structure MDKNTPIYIAISGGGFHSHTAMSAWISGILHHSELESLEQIFENVRGISANSGGSWFMSH CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH LGYSNAFVKSLLEDSQSEKSTWSSSGYLGKMGESFFSKDDEKASDMSIFSPVKIETFLAK CCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH YIDLFNVYAEIFPNGNRRWHQFVTTKVYEPLEKLGNAENGFETMKGKKLSETNDRLPWFR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCC EKDFVIAAGLLNSKVVLHATGGLGSTNQVYSVNSADGSKLRNFVPMCLSGVANGRKAAPV CCCEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCE FVSGPQEVIYSEESKWRIPLTANHPQNLNLLDATIASSSAIAFLASESSIGEMIPSLNEG EECCCHHHHCCCCCCEEEEEECCCCCCCCEEEHHHCCCCEEEEEECCCHHHHHHHHHCCC LTFEWISYQEADFAPPIRFGNDRIEILKTLERASYDEFANQKMARVADGGYLDNTSVVFQ CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEE LRHMKENGDLKDGFHLVLFVNGSDEGVKYHGYEMNVGIATLFGHDGLSEAHRAERVKKGE EEECCCCCCCCCCEEEEEEEECCCCCEEEECEEECCEEEEEECCCCHHHHHHHHHHHCCC KIQPEEGSIWNSPFSDLCMEIPSPHVFETEPLENNTAISMWNWKSKDEKISLQARKIPVT CCCCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCCCEEEEECCCCCCCEEEEEEEECEEE TVENKTYGISAGVMGTIYIFEVTQPESFPMPTHRDILETYEYLFETIRNEACAKNQALSH EECCCCEEEECCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKEALALKINIPTDPHPIPEIVKKNDNIVLQWNSDGSYLSSSDSGFRYYLATLNRLKSYA HHHHEEEEEECCCCCCCCHHHHCCCCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHH KIHKFDNMYSDNLHHGDLVRIKTTEQFKGIWNQRKLLGAFANSYELYYWSDSGDKTNWII HHHHHHCHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEE EKAAGTAQETEIAYGEKVYIKNKSYNQYLVFAKDGYLTTKKIQNPGDEHTWVIHRPE EECCCCCCCCEECCCCEEEEECCCCCEEEEEEECCEEEEHHCCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA