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The map label for this gene is hypB [H]

Identifier: 113474631

GI number: 113474631

Start: 1271553

End: 1272392

Strand: Direct

Name: hypB [H]

Synonym: Tery_0802

Alternate gene names: 113474631

Gene position: 1271553-1272392 (Clockwise)

Preceding gene: 113474627

Following gene: 113474632

Centisome position: 16.41

GC content: 33.45

Gene sequence:

>840_bases
ATGTGTGTAACTTGTGGTTGTTCCGGTAATAATGAAGCTACTATTACTAACTCTCAAACAGGAGAAAAAATAGCAATAAG
TAACCATCATCCTCATACCCATACTCTCCCAGATGGTACTGTCATTACTCATACTCATTCTGATAATTATACTCCCAAAA
ATCATAATCATAAAACGGCAGAAGATCATGCCAAAATCCACAAAAATACTATTAGTTTAGAAAAAGAAATTTTACAGAAA
AATGACCTGATAGCTGCCCAAAATAGAGGTTGGTTTAAAGGCCGAAATATTTTGGCTTTAAATTTAGTTAGTTCTCCTGG
TTCTGGCAAAACAACTTTATTATCTCGCACAATTAATGATTTAAAATCTGATTTGACTTTTAGTGTGATTGAGGGTGACC
AAGAAACTATTAATGATGCGGAAAAAATTCGCAAAACTGGTTGTAAAGTTGTGCAAATTAATACTGGTAAAGGCTGTCAC
TTGGAAGCTGCAATGGTAGAAAAAGGTTATACAGAATTAAATCCTCCTTTAAATTCAGTTTTGATGATTGAAAATGTGGG
GAATTTAGTTTGCCCTGCTTTATTTGATTTAGGAGAAAGTTGTAAGGTGGCAATTCTATCAGTTACTGAAGGAGAAGATA
AACCGATTAAATATCCCTATATGTTTCGAGAAAGTCAGGTAATGATTCTGACAAAAATTGATTTATTGCCTTATTTACAG
TTTGATTTAAACCGCTGTGTTGAATATGCAAAGCAGGTAAATCCTCAGATTCGTATTTTTCAGGTTTCTGCTTTTACCGG
AGAGGGTTTGAATAAGTGGTATGATTGGTTAAAAAGTTAA

Upstream 100 bases:

>100_bases
AAAAGGAAAAAAATTAGCGCTTTGGCAACATTTTAGTCTCAAATAAATTTCAACCTTAATAAGGTTGAAAAACTAAAAAT
TAAATAAATGGAGAAAAATT

Downstream 100 bases:

>100_bases
ATTATTCTCGAAAAATTATCAGGTAATCTAAATATTTTATCCTAGGGGTTTAGTGTTCATATATCAGGGCGAATGGGATT
GAAATACTAAACTCCTACAG

Product: hydrogenase accessory protein HypB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MCVTCGCSGNNEATITNSQTGEKIAISNHHPHTHTLPDGTVITHTHSDNYTPKNHNHKTAEDHAKIHKNTISLEKEILQK
NDLIAAQNRGWFKGRNILALNLVSSPGSGKTTLLSRTINDLKSDLTFSVIEGDQETINDAEKIRKTGCKVVQINTGKGCH
LEAAMVEKGYTELNPPLNSVLMIENVGNLVCPALFDLGESCKVAILSVTEGEDKPIKYPYMFRESQVMILTKIDLLPYLQ
FDLNRCVEYAKQVNPQIRIFQVSAFTGEGLNKWYDWLKS

Sequences:

>Translated_279_residues
MCVTCGCSGNNEATITNSQTGEKIAISNHHPHTHTLPDGTVITHTHSDNYTPKNHNHKTAEDHAKIHKNTISLEKEILQK
NDLIAAQNRGWFKGRNILALNLVSSPGSGKTTLLSRTINDLKSDLTFSVIEGDQETINDAEKIRKTGCKVVQINTGKGCH
LEAAMVEKGYTELNPPLNSVLMIENVGNLVCPALFDLGESCKVAILSVTEGEDKPIKYPYMFRESQVMILTKIDLLPYLQ
FDLNRCVEYAKQVNPQIRIFQVSAFTGEGLNKWYDWLKS
>Mature_279_residues
MCVTCGCSGNNEATITNSQTGEKIAISNHHPHTHTLPDGTVITHTHSDNYTPKNHNHKTAEDHAKIHKNTISLEKEILQK
NDLIAAQNRGWFKGRNILALNLVSSPGSGKTTLLSRTINDLKSDLTFSVIEGDQETINDAEKIRKTGCKVVQINTGKGCH
LEAAMVEKGYTELNPPLNSVLMIENVGNLVCPALFDLGESCKVAILSVTEGEDKPIKYPYMFRESQVMILTKIDLLPYLQ
FDLNRCVEYAKQVNPQIRIFQVSAFTGEGLNKWYDWLKS

Specific function: Could be involved in nickel binding and accumulation [H]

COG id: COG0378

COG function: function code OK; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypB/hupM family [H]

Homologues:

Organism=Escherichia coli, GI1789082, Length=296, Percent_Identity=45.945945945946, Blast_Score=265, Evalue=3e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR004392 [H]

Pfam domain/function: PF02492 cobW [H]

EC number: NA

Molecular weight: Translated: 31065; Mature: 31065

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCVTCGCSGNNEATITNSQTGEKIAISNHHPHTHTLPDGTVITHTHSDNYTPKNHNHKTA
CEEEECCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCH
EDHAKIHKNTISLEKEILQKNDLIAAQNRGWFKGRNILALNLVSSPGSGKTTLLSRTIND
HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
LKSDLTFSVIEGDQETINDAEKIRKTGCKVVQINTGKGCHLEAAMVEKGYTELNPPLNSV
HHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHCCCCCCCCCCCCE
LMIENVGNLVCPALFDLGESCKVAILSVTEGEDKPIKYPYMFRESQVMILTKIDLLPYLQ
EEEECCCCHHHHHHHCCCCCCEEEEEEEECCCCCCEECCEEECCCCEEEEEEECHHHHHH
FDLNRCVEYAKQVNPQIRIFQVSAFTGEGLNKWYDWLKS
HHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHCC
>Mature Secondary Structure
MCVTCGCSGNNEATITNSQTGEKIAISNHHPHTHTLPDGTVITHTHSDNYTPKNHNHKTA
CEEEECCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCH
EDHAKIHKNTISLEKEILQKNDLIAAQNRGWFKGRNILALNLVSSPGSGKTTLLSRTIND
HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
LKSDLTFSVIEGDQETINDAEKIRKTGCKVVQINTGKGCHLEAAMVEKGYTELNPPLNSV
HHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHCCCCCCCCCCCCE
LMIENVGNLVCPALFDLGESCKVAILSVTEGEDKPIKYPYMFRESQVMILTKIDLLPYLQ
EEEECCCCHHHHHHHCCCCCCEEEEEEEECCCCCCEECCEEECCCCEEEEEEECHHHHHH
FDLNRCVEYAKQVNPQIRIFQVSAFTGEGLNKWYDWLKS
HHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8352644; 12948488 [H]