| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474632
Identifier: 113474632
GI number: 113474632
Start: 1275919
End: 1277823
Strand: Direct
Name: 113474632
Synonym: Tery_0803
Alternate gene names: NA
Gene position: 1275919-1277823 (Clockwise)
Preceding gene: 113474631
Following gene: 113474634
Centisome position: 16.46
GC content: 41.15
Gene sequence:
>1905_bases ATGGATAATTTTCCGCAAATCGAACCCCCTGCTGAAGGGGAAGCAGTCCAACTTATTGGCCACAACAAGAAAGAGAGTTT TATAAATGGATCCGACGATGCTGAGGTTCTGAAGGGTAAAAAGCGTGATGATATTCTCGCTGGCTCCGGTGGAGAAGACT GGCTCTATGGAAAACAAGGTCAAGACATCCTGCTCGGCGACAACGTACCTGACGAGACTGACTTTGACGCAGATGGCAAG GTAACGGTCAATCATACCTCAATGAATGACTACCTTTTCGGGAATATTGGTGAGGATACTCTCATTGACCAATTCGGGAG TGACGGTTTAATAGGTGGTCAAGGGAATGATTTGATTATTAGTATGAGTGACTCCAATATTCCCCAGGAAAATCAGACTA TACCAGCCAACGTAGATGATGGTGATGACCTTGCTCGGCTTAATTTTTCTGATACATATATTAATCCAGACAACCTTAGC GCTAATGACACATTGAAAGGTGGAAAGGAGGCAGATACATTTTCCTTCCAATTATTGATAAATGCTTCAAAAGAAATTGT CGAGAAGCACACTAATGACCAGGGAGTTACCAACTGGGGAATGAATGGTGTCGCCGGAGAAAATGATAACTACCATGATC ATTGGGTGGAAGGCATTGGGCATGATAAAATTATTGACTTTAATGCCAAGGAAGGAGACTCAATTAAAGTTTTCGGCCAT ACAGTACAAAAGCGACTCCTTGAGAATGATGAACAATCTAAAATCGCTGTTATTGGTCTCTACAGTGATCAAGGTAATGA TGGACAGCGAGGTGGGGGTGCTCATGACCTAGATGTTCTCGGTAAAATTGAAGTGCATTATAAAGGCAAGTTTGACTTTG ATTCAGATGTTACTGTAGAAAATGAAGATTACGGAGCTTATGGCTTGGACAGTAATGCAATGATTGAGGAATATGATATT CCCAATAAACTGGATGAAGCTAATACATCTGACTTTGTCGGAACTAACGGAGATGACGAAATTGAAGGTAATCTTGGCAA AAATAAGATACAAGGTCTTCAAGGTGATGATCATCTTATTGGCCAAGCGGGGAAAGACAAGTTAGAAGGTTCAGAAGGTG ATGATCATCTTATTGGTGATTACATACCTACAGAAGCTGATTACGATGCTGAAGGAGTACTCGACCTTCCCGAAGATGTA GTCTACGATGACAAACTTTTTGGCGATACAGAATCTGATACTCTTGCCGATCAGTATGGGGATGATAAACTCACAGGAGG TGATGGTAATGATAGGTTGATCAGTATTAGTGATAGTAGTATTCCTCGTGAGAACGCTAATATTCCAGCTGGTGTAGATG ATGGTGACGACCTTAAGAAGCTTGATTTTTCCAATGAACTTATCAATCCATATAATACCGCCAGTAAGGATATTTTGACA GGAGGTTCCGGTGCTGATACGTTTGAATGGAATCTTCTTATCAATGCCTCAAAAGACATTGTCGAGAAGCACACTGATGA CGACGAAATCATCAACTGGGGAATGAATGGTGTGGCCGGAGAAAATGATAACTACCATGATCATTGGGTTGATGGTATTG GAAAGGATTTAATTATGGATTTCAGTGGACAGGGTGGTGAGGATGATAAGATTATCGTCCGAGGACATACGGTTAAAGTC AAGCTCTTGAGTGAAACGTCAGATAAGGCAGAGTTAGGTATCTACAGCGACCAAGGTAATGACGGAGAACGAGGTAATGG TGCCCATGATTTTGATGTTCTAGGAAAAATTGTAGTCAAACATGATGGTAACTTTAACTTTGATAATGATGTACAAGTCG TAGGGGTTGATTATGGTGCCTATGGGAATGGTGCAGAATTATATCAAGTGTTTGGACTTGAATAA
Upstream 100 bases:
>100_bases TGAAAATTGTTGCTCTTAAAATTAAGTAATTTTTCTATTGCTAAACTAGGGTATAAAATATTATTATAGTATAAGAATAT ACTTTTTTGAGGTAAACATT
Downstream 100 bases:
>100_bases CTGCCGGGTCGGGTTACATAGACCTGAACTTTCCCTTTGACAAAAAACTATAATATGTGCTATAAAATAGATTTATTTGG TAAAAAAATATATTTTCCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 634; Mature: 634
Protein sequence:
>634_residues MDNFPQIEPPAEGEAVQLIGHNKKESFINGSDDAEVLKGKKRDDILAGSGGEDWLYGKQGQDILLGDNVPDETDFDADGK VTVNHTSMNDYLFGNIGEDTLIDQFGSDGLIGGQGNDLIISMSDSNIPQENQTIPANVDDGDDLARLNFSDTYINPDNLS ANDTLKGGKEADTFSFQLLINASKEIVEKHTNDQGVTNWGMNGVAGENDNYHDHWVEGIGHDKIIDFNAKEGDSIKVFGH TVQKRLLENDEQSKIAVIGLYSDQGNDGQRGGGAHDLDVLGKIEVHYKGKFDFDSDVTVENEDYGAYGLDSNAMIEEYDI PNKLDEANTSDFVGTNGDDEIEGNLGKNKIQGLQGDDHLIGQAGKDKLEGSEGDDHLIGDYIPTEADYDAEGVLDLPEDV VYDDKLFGDTESDTLADQYGDDKLTGGDGNDRLISISDSSIPRENANIPAGVDDGDDLKKLDFSNELINPYNTASKDILT GGSGADTFEWNLLINASKDIVEKHTDDDEIINWGMNGVAGENDNYHDHWVDGIGKDLIMDFSGQGGEDDKIIVRGHTVKV KLLSETSDKAELGIYSDQGNDGERGNGAHDFDVLGKIVVKHDGNFNFDNDVQVVGVDYGAYGNGAELYQVFGLE
Sequences:
>Translated_634_residues MDNFPQIEPPAEGEAVQLIGHNKKESFINGSDDAEVLKGKKRDDILAGSGGEDWLYGKQGQDILLGDNVPDETDFDADGK VTVNHTSMNDYLFGNIGEDTLIDQFGSDGLIGGQGNDLIISMSDSNIPQENQTIPANVDDGDDLARLNFSDTYINPDNLS ANDTLKGGKEADTFSFQLLINASKEIVEKHTNDQGVTNWGMNGVAGENDNYHDHWVEGIGHDKIIDFNAKEGDSIKVFGH TVQKRLLENDEQSKIAVIGLYSDQGNDGQRGGGAHDLDVLGKIEVHYKGKFDFDSDVTVENEDYGAYGLDSNAMIEEYDI PNKLDEANTSDFVGTNGDDEIEGNLGKNKIQGLQGDDHLIGQAGKDKLEGSEGDDHLIGDYIPTEADYDAEGVLDLPEDV VYDDKLFGDTESDTLADQYGDDKLTGGDGNDRLISISDSSIPRENANIPAGVDDGDDLKKLDFSNELINPYNTASKDILT GGSGADTFEWNLLINASKDIVEKHTDDDEIINWGMNGVAGENDNYHDHWVDGIGKDLIMDFSGQGGEDDKIIVRGHTVKV KLLSETSDKAELGIYSDQGNDGERGNGAHDFDVLGKIVVKHDGNFNFDNDVQVVGVDYGAYGNGAELYQVFGLE >Mature_634_residues MDNFPQIEPPAEGEAVQLIGHNKKESFINGSDDAEVLKGKKRDDILAGSGGEDWLYGKQGQDILLGDNVPDETDFDADGK VTVNHTSMNDYLFGNIGEDTLIDQFGSDGLIGGQGNDLIISMSDSNIPQENQTIPANVDDGDDLARLNFSDTYINPDNLS ANDTLKGGKEADTFSFQLLINASKEIVEKHTNDQGVTNWGMNGVAGENDNYHDHWVEGIGHDKIIDFNAKEGDSIKVFGH TVQKRLLENDEQSKIAVIGLYSDQGNDGQRGGGAHDLDVLGKIEVHYKGKFDFDSDVTVENEDYGAYGLDSNAMIEEYDI PNKLDEANTSDFVGTNGDDEIEGNLGKNKIQGLQGDDHLIGQAGKDKLEGSEGDDHLIGDYIPTEADYDAEGVLDLPEDV VYDDKLFGDTESDTLADQYGDDKLTGGDGNDRLISISDSSIPRENANIPAGVDDGDDLKKLDFSNELINPYNTASKDILT GGSGADTFEWNLLINASKDIVEKHTDDDEIINWGMNGVAGENDNYHDHWVDGIGKDLIMDFSGQGGEDDKIIVRGHTVKV KLLSETSDKAELGIYSDQGNDGERGNGAHDFDVLGKIVVKHDGNFNFDNDVQVVGVDYGAYGNGAELYQVFGLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68814; Mature: 68814
Theoretical pI: Translated: 3.90; Mature: 3.90
Prosite motif: PS00330 HEMOLYSIN_CALCIUM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNFPQIEPPAEGEAVQLIGHNKKESFINGSDDAEVLKGKKRDDILAGSGGEDWLYGKQG CCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCHHHHCCCCCCCEEECCCCCCCEECCCC QDILLGDNVPDETDFDADGKVTVNHTSMNDYLFGNIGEDTLIDQFGSDGLIGGQGNDLII CEEEECCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCHHHHHHCCCCCEECCCCCEEEE SMSDSNIPQENQTIPANVDDGDDLARLNFSDTYINPDNLSANDTLKGGKEADTFSFQLLI EECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCEEEEEEEE NASKEIVEKHTNDQGVTNWGMNGVAGENDNYHDHWVEGIGHDKIIDFNAKEGDSIKVFGH CCCHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCEEEEEHH TVQKRLLENDEQSKIAVIGLYSDQGNDGQRGGGAHDLDVLGKIEVHYKGKFDFDSDVTVE HHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEE NEDYGAYGLDSNAMIEEYDIPNKLDEANTSDFVGTNGDDEIEGNLGKNKIQGLQGDDHLI CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEE GQAGKDKLEGSEGDDHLIGDYIPTEADYDAEGVLDLPEDVVYDDKLFGDTESDTLADQYG CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHEECCHHCCCCCCCHHHHHCC DDKLTGGDGNDRLISISDSSIPRENANIPAGVDDGDDLKKLDFSNELINPYNTASKDILT CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHCCCCCCCCCCEEE GGSGADTFEWNLLINASKDIVEKHTDDDEIINWGMNGVAGENDNYHDHWVDGIGKDLIMD CCCCCCEEEEEEEEECCHHHHHHCCCCHHHEECCCCCCCCCCCCCCHHHHHHCCCEEEEE FSGQGGEDDKIIVRGHTVKVKLLSETSDKAELGIYSDQGNDGERGNGAHDFDVLGKIVVK CCCCCCCCCEEEEECCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCHHHHEEEEEE HDGNFNFDNDVQVVGVDYGAYGNGAELYQVFGLE ECCCCCCCCCEEEEEEECCCCCCCCCEEEEECCC >Mature Secondary Structure MDNFPQIEPPAEGEAVQLIGHNKKESFINGSDDAEVLKGKKRDDILAGSGGEDWLYGKQG CCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCHHHHCCCCCCCEEECCCCCCCEECCCC QDILLGDNVPDETDFDADGKVTVNHTSMNDYLFGNIGEDTLIDQFGSDGLIGGQGNDLII CEEEECCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCHHHHHHCCCCCEECCCCCEEEE SMSDSNIPQENQTIPANVDDGDDLARLNFSDTYINPDNLSANDTLKGGKEADTFSFQLLI EECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCEEEEEEEE NASKEIVEKHTNDQGVTNWGMNGVAGENDNYHDHWVEGIGHDKIIDFNAKEGDSIKVFGH CCCHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCEEEEEHH TVQKRLLENDEQSKIAVIGLYSDQGNDGQRGGGAHDLDVLGKIEVHYKGKFDFDSDVTVE HHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEE NEDYGAYGLDSNAMIEEYDIPNKLDEANTSDFVGTNGDDEIEGNLGKNKIQGLQGDDHLI CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEE GQAGKDKLEGSEGDDHLIGDYIPTEADYDAEGVLDLPEDVVYDDKLFGDTESDTLADQYG CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHEECCHHCCCCCCCHHHHHCC DDKLTGGDGNDRLISISDSSIPRENANIPAGVDDGDDLKKLDFSNELINPYNTASKDILT CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHCCCCCCCCCCEEE GGSGADTFEWNLLINASKDIVEKHTDDDEIINWGMNGVAGENDNYHDHWVDGIGKDLIMD CCCCCCEEEEEEEEECCHHHHHHCCCCHHHEECCCCCCCCCCCCCCHHHHHHCCCEEEEE FSGQGGEDDKIIVRGHTVKVKLLSETSDKAELGIYSDQGNDGERGNGAHDFDVLGKIVVK CCCCCCCCCEEEEECCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCHHHHEEEEEE HDGNFNFDNDVQVVGVDYGAYGNGAELYQVFGLE ECCCCCCCCCEEEEEEECCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA