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The map label for this gene is hypA

Identifier: 113474627

GI number: 113474627

Start: 1265648

End: 1265992

Strand: Direct

Name: hypA

Synonym: Tery_0798

Alternate gene names: 113474627

Gene position: 1265648-1265992 (Clockwise)

Preceding gene: 113474626

Following gene: 113474631

Centisome position: 16.33

GC content: 33.62

Gene sequence:

>345_bases
ATGCATGAATTAGGAATTACTCAAAATATTGTTGCCATAGTTGCCGAAAATGCTAACAATAGATTGATAAAACGAGTCAC
CCTAGAAATAGGTGAACTATCTGCTATTATGCCCAATGCTATTGAATTTTGTTTTGATGTTTGCACTCAAGGTACAGTAT
TGGAAGGGGCAACTTTAGAAATTATCAAAATTCCTGGTTTAGGAAAATGTCGTCAATGTGCAACAGAAATTCCCCTAGAG
CAACCATTCGGCATTTGTCATGTTTGTAATAGTGTTGAACTTGATATTATTCAAGGTCAAGAACTTAAAATTAAGGAAAT
GGAAGTAGAAGAATTATCTGTTTAA

Upstream 100 bases:

>100_bases
AACTTTTCACTTTCAACTTTTATTTCCCTTCTGCCTTCTGCCTTTCTTTCTCCAAAGTGTAGGTATTTAAAAGCACAGGA
TATAACACCCATTATCAAAT

Downstream 100 bases:

>100_bases
TATCAAAAGAATTGAAGTTAACTTAAACTTAACTACTTCAACTTTTCCTATTCAGTAAAGTTGACATTGTGTAATATAGT
TTTCCCTTTATAACTTAAAA

Product: hydrogenase expression/synthesis, HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MHELGITQNIVAIVAENANNRLIKRVTLEIGELSAIMPNAIEFCFDVCTQGTVLEGATLEIIKIPGLGKCRQCATEIPLE
QPFGICHVCNSVELDIIQGQELKIKEMEVEELSV

Sequences:

>Translated_114_residues
MHELGITQNIVAIVAENANNRLIKRVTLEIGELSAIMPNAIEFCFDVCTQGTVLEGATLEIIKIPGLGKCRQCATEIPLE
QPFGICHVCNSVELDIIQGQELKIKEMEVEELSV
>Mature_114_residues
MHELGITQNIVAIVAENANNRLIKRVTLEIGELSAIMPNAIEFCFDVCTQGTVLEGATLEIIKIPGLGKCRQCATEIPLE
QPFGICHVCNSVELDIIQGQELKIKEMEVEELSV

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family

Homologues:

Organism=Escherichia coli, GI1789365, Length=113, Percent_Identity=35.3982300884956, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HYPA_TRIEI (Q117V9)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720688.1
- STRING:   Q117V9
- GeneID:   4243209
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_0798
- NMPDR:   fig|203124.1.peg.2346
- eggNOG:   COG0375
- HOGENOM:   HBG688671
- OMA:   KEFMIKE
- PhylomeDB:   Q117V9
- ProtClustDB:   CLSK895358
- BioCyc:   TERY203124:TERY_0798-MONOMER
- HAMAP:   MF_00213
- InterPro:   IPR000688
- InterPro:   IPR020538

Pfam domain/function: PF01155 HypA

EC number: NA

Molecular weight: Translated: 12521; Mature: 12521

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS01249 HYPA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHELGITQNIVAIVAENANNRLIKRVTLEIGELSAIMPNAIEFCFDVCTQGTVLEGATLE
CCCCCCCCCEEEEEEECCCCEEEEHHHHHHHCHHHHCHHHHHHHHHHHCCCCEECCCEEE
IIKIPGLGKCRQCATEIPLEQPFGICHVCNSVELDIIQGQELKIKEMEVEELSV
EEECCCCCHHHHHHHHCCCCCCCCCEECCCCCEEEEECCCCEEEEECCHHHCCC
>Mature Secondary Structure
MHELGITQNIVAIVAENANNRLIKRVTLEIGELSAIMPNAIEFCFDVCTQGTVLEGATLE
CCCCCCCCCEEEEEEECCCCEEEEHHHHHHHCHHHHCHHHHHHHHHHHCCCCEECCCEEE
IIKIPGLGKCRQCATEIPLEQPFGICHVCNSVELDIIQGQELKIKEMEVEELSV
EEECCCCCHHHHHHHHCCCCCCCCCEECCCCCEEEEECCCCEEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA