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The map label for this gene is ureD

Identifier: 113474590

GI number: 113474590

Start: 1207636

End: 1208475

Strand: Direct

Name: ureD

Synonym: Tery_0749

Alternate gene names: 113474590

Gene position: 1207636-1208475 (Clockwise)

Preceding gene: 113474589

Following gene: 113474591

Centisome position: 15.58

GC content: 35.12

Gene sequence:

>840_bases
ATGAGCACAAACAATTTGGATATCAAACTAAATTGCAATAGTTCTGGTCAAACTATAGTAACTCATCAGTATACGACTCA
TCCTTTGCGTTTATCTGGTGTATTTCGTTTGGATACTACTGATCCGCGTACTGCTTACTTGTACCTTATTAATACATCAC
CCGGGTTATTAGCTGGAGATAACTTGAGTTTATCTTTACAGCTAGAAAAGGGAACGAGTGTTTATCTTACTGACCAAGCT
GCTATTAAAGTTCATGCTATGCCAATGACAACTACTAAAGCAAATACAAATATAAAAATTAAAGTCGAAGCAGGAGCAAG
ATTAGAATTAGTAGCAGAACCTATAATCTTATTTGCAGATGCAGCATTAGAACAAACTACTTATATTCAACTTCATTCTA
GGGCAGAACTTTTTTGGAGCGAGATTATTCTTCCTGGGAGACTAGCTAGAGGAGAGTGGTACGAATTTCGCTACTATTTG
AGTCAGTTAGAGATAACCTCGATGACAGAAGAAATATGTTTTAGGGATGCTATTCACTTAGAAGGAAAGCAGAATATATT
CAAGCACAGGGATCTATTTGCTGCAAAACCTGTACTTGCTAATTTAATTGTAGTTCAACCACATAGCGATCTTGAAGTAC
TTAGTCAAAAGCTTGAAAATCTTGAAGCAGCTAATTGTCCTGATCTGCTTTTAGGTAGCTCTATATTACCAAACAATAAA
GGTTTATTGCTTCGTGCTTTAGCCAGTAAAACTCCACAAATAAAAAAGTATATTAAATATGCTTTAAATTGTGTTCGTAA
TTTAACGAACCGCTCTAGTTTGCCCTATATTTCTAAATGA

Upstream 100 bases:

>100_bases
CCAATTGTAAAACCGGAGTTGGATTGAATGAGGTAGTTAATTTTATTCTAGAGAGAGTTTTATTTCGCACTGCTTTGTCA
GTAAAGAATTTGGAAAAGTG

Downstream 100 bases:

>100_bases
ATTGAATGCTCGATCAAACCAGAGAAATAGCACAAACTTATTTAGGTAATTTGACAAAAGATGCAAACCTAGCCCAAAGG
GTAAAAACAGCCCACACACT

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSTNNLDIKLNCNSSGQTIVTHQYTTHPLRLSGVFRLDTTDPRTAYLYLINTSPGLLAGDNLSLSLQLEKGTSVYLTDQA
AIKVHAMPMTTTKANTNIKIKVEAGARLELVAEPIILFADAALEQTTYIQLHSRAELFWSEIILPGRLARGEWYEFRYYL
SQLEITSMTEEICFRDAIHLEGKQNIFKHRDLFAAKPVLANLIVVQPHSDLEVLSQKLENLEAANCPDLLLGSSILPNNK
GLLLRALASKTPQIKKYIKYALNCVRNLTNRSSLPYISK

Sequences:

>Translated_279_residues
MSTNNLDIKLNCNSSGQTIVTHQYTTHPLRLSGVFRLDTTDPRTAYLYLINTSPGLLAGDNLSLSLQLEKGTSVYLTDQA
AIKVHAMPMTTTKANTNIKIKVEAGARLELVAEPIILFADAALEQTTYIQLHSRAELFWSEIILPGRLARGEWYEFRYYL
SQLEITSMTEEICFRDAIHLEGKQNIFKHRDLFAAKPVLANLIVVQPHSDLEVLSQKLENLEAANCPDLLLGSSILPNNK
GLLLRALASKTPQIKKYIKYALNCVRNLTNRSSLPYISK
>Mature_278_residues
STNNLDIKLNCNSSGQTIVTHQYTTHPLRLSGVFRLDTTDPRTAYLYLINTSPGLLAGDNLSLSLQLEKGTSVYLTDQAA
IKVHAMPMTTTKANTNIKIKVEAGARLELVAEPIILFADAALEQTTYIQLHSRAELFWSEIILPGRLARGEWYEFRYYLS
QLEITSMTEEICFRDAIHLEGKQNIFKHRDLFAAKPVLANLIVVQPHSDLEVLSQKLENLEAANCPDLLLGSSILPNNKG
LLLRALASKTPQIKKYIKYALNCVRNLTNRSSLPYISK

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_TRIEI (Q117Z6)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720651.1
- STRING:   Q117Z6
- GeneID:   4242481
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_0749
- NMPDR:   fig|203124.1.peg.709
- eggNOG:   COG0829
- HOGENOM:   HBG441827
- OMA:   LYWDEAL
- ProtClustDB:   CLSK2398288
- BioCyc:   TERY203124:TERY_0749-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 31273; Mature: 31141

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNNLDIKLNCNSSGQTIVTHQYTTHPLRLSGVFRLDTTDPRTAYLYLINTSPGLLAGD
CCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEECCCCEEECC
NLSLSLQLEKGTSVYLTDQAAIKVHAMPMTTTKANTNIKIKVEAGARLELVAEPIILFAD
CEEEEEEEECCCEEEEECCCEEEEEEEEEEEECCCCEEEEEEECCCEEEEEECCEEEEEC
AALEQTTYIQLHSRAELFWSEIILPGRLARGEWYEFRYYLSQLEITSMTEEICFRDAIHL
CHHCCEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEC
EGKQNIFKHRDLFAAKPVLANLIVVQPHSDLEVLSQKLENLEAANCPDLLLGSSILPNNK
CCCHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCC
GLLLRALASKTPQIKKYIKYALNCVRNLTNRSSLPYISK
CEEEEEHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
STNNLDIKLNCNSSGQTIVTHQYTTHPLRLSGVFRLDTTDPRTAYLYLINTSPGLLAGD
CCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEECCCCEEECC
NLSLSLQLEKGTSVYLTDQAAIKVHAMPMTTTKANTNIKIKVEAGARLELVAEPIILFAD
CEEEEEEEECCCEEEEECCCEEEEEEEEEEEECCCCEEEEEEECCCEEEEEECCEEEEEC
AALEQTTYIQLHSRAELFWSEIILPGRLARGEWYEFRYYLSQLEITSMTEEICFRDAIHL
CHHCCEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEC
EGKQNIFKHRDLFAAKPVLANLIVVQPHSDLEVLSQKLENLEAANCPDLLLGSSILPNNK
CCCHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCC
GLLLRALASKTPQIKKYIKYALNCVRNLTNRSSLPYISK
CEEEEEHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA