| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474556
Identifier: 113474556
GI number: 113474556
Start: 1147651
End: 1148427
Strand: Direct
Name: 113474556
Synonym: Tery_0710
Alternate gene names: NA
Gene position: 1147651-1148427 (Clockwise)
Preceding gene: 113474553
Following gene: 113474564
Centisome position: 14.81
GC content: 36.04
Gene sequence:
>777_bases ATGTCATTACATAAGAGAAATCTGATTCTTGCAGCCATAACTGGATTTGCTAGTACTGCCTCTATTTTTTATTTGACACT TCAGTCTAATTCTTCACAATTTGCTAGTAATTATTTGCAGAAACAAAAGTTGCATAGCAACCTAGTTTCTACTAAACTAC AACCCTCATTTTCAACTCTTAACTCCTCAGATTTAGTTACTCAAGAATCTAGTCCAGTTATAATTACACCACCAACATCA GGATGCAAAATAGTTATGGCCATAGTAGATGATCCTGAAGGACCTCTGAATGTTCGTAGCATTCCAGAAGTAAAAGAAGG TAATATAGTTGGTCAACTTAACAATAATACCTTTATTTCTGTCGCAGATGAACAATCTGGTTGGCTACAAATTACTAATC CTCTTAGAGGTTGGGTTGCTAAGAGCCGAACTCGCAGTAGTTGTGCAAGAGTAGAGCAGACCATTACTTTTTCTCCAGGA AGCGACTTAGCTATTGTTAGAGGTGAGATTATTGGTACTGGTAGTCATAACTACCAAGTTAGGATGATTCAGGGCCAGAG CCTAACTATTAAAAATTTAGGAGATGTCTTTCCGGCAATTATTAGCCCTGATGACCAACTTATGACAAGGGAACCTAAGA TTTATATTCAAGGTAATGAAAGTGAATGGACAGGTACTATGCCTGTGAGTGGGGTATACACTTTACAATTAGATTCTAAT TTTCGTGGATTTAAATATGAGTTTTTAGTATTAATAAAAGGCAATGATAGTTATTAG
Upstream 100 bases:
>100_bases CAGCATATCTTAGCTTTAATAGCTAATAGTAAAGCTTTTTATTTAAATGAAAATTGACTAAAAAAGTGAAATAAAATTAA GTTAATCAAGGAATAAAATT
Downstream 100 bases:
>100_bases CTTAAACTCACAATCTATTAAAATTTTGCCTACTTTATTTTATGGGAATAATTATTTTCAAATAGGAATTGATATTATAA CTTATATACCTTTTCCATGA
Product: SH3, type 3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MSLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTLNSSDLVTQESSPVIITPPTS GCKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFISVADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPG SDLAIVRGEIIGTGSHNYQVRMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSN FRGFKYEFLVLIKGNDSY
Sequences:
>Translated_258_residues MSLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTLNSSDLVTQESSPVIITPPTS GCKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFISVADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPG SDLAIVRGEIIGTGSHNYQVRMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSN FRGFKYEFLVLIKGNDSY >Mature_257_residues SLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTLNSSDLVTQESSPVIITPPTSG CKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFISVADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPGS DLAIVRGEIIGTGSHNYQVRMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSNF RGFKYEFLVLIKGNDSY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28353; Mature: 28221
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTL CCCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCC NSSDLVTQESSPVIITPPTSGCKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFIS CCCCEEEECCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEE VADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPGSDLAIVRGEIIGTGSHNYQV EECCCCCEEEECCCHHHHHHHCCHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCCCEEE RMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSN EEEECCEEEEHHHHCHHHHHCCCCHHHEECCCEEEEECCCCCEEECCCCCEEEEEEECCC FRGFKYEFLVLIKGNDSY CCCEEEEEEEEEECCCCC >Mature Secondary Structure SLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTL CCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCC NSSDLVTQESSPVIITPPTSGCKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFIS CCCCEEEECCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEE VADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPGSDLAIVRGEIIGTGSHNYQV EECCCCCEEEECCCHHHHHHHCCHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCCCEEE RMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSN EEEECCEEEEHHHHCHHHHHCCCCHHHEECCCEEEEECCCCCEEECCCCCEEEEEEECCC FRGFKYEFLVLIKGNDSY CCCEEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA