Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474556

Identifier: 113474556

GI number: 113474556

Start: 1147651

End: 1148427

Strand: Direct

Name: 113474556

Synonym: Tery_0710

Alternate gene names: NA

Gene position: 1147651-1148427 (Clockwise)

Preceding gene: 113474553

Following gene: 113474564

Centisome position: 14.81

GC content: 36.04

Gene sequence:

>777_bases
ATGTCATTACATAAGAGAAATCTGATTCTTGCAGCCATAACTGGATTTGCTAGTACTGCCTCTATTTTTTATTTGACACT
TCAGTCTAATTCTTCACAATTTGCTAGTAATTATTTGCAGAAACAAAAGTTGCATAGCAACCTAGTTTCTACTAAACTAC
AACCCTCATTTTCAACTCTTAACTCCTCAGATTTAGTTACTCAAGAATCTAGTCCAGTTATAATTACACCACCAACATCA
GGATGCAAAATAGTTATGGCCATAGTAGATGATCCTGAAGGACCTCTGAATGTTCGTAGCATTCCAGAAGTAAAAGAAGG
TAATATAGTTGGTCAACTTAACAATAATACCTTTATTTCTGTCGCAGATGAACAATCTGGTTGGCTACAAATTACTAATC
CTCTTAGAGGTTGGGTTGCTAAGAGCCGAACTCGCAGTAGTTGTGCAAGAGTAGAGCAGACCATTACTTTTTCTCCAGGA
AGCGACTTAGCTATTGTTAGAGGTGAGATTATTGGTACTGGTAGTCATAACTACCAAGTTAGGATGATTCAGGGCCAGAG
CCTAACTATTAAAAATTTAGGAGATGTCTTTCCGGCAATTATTAGCCCTGATGACCAACTTATGACAAGGGAACCTAAGA
TTTATATTCAAGGTAATGAAAGTGAATGGACAGGTACTATGCCTGTGAGTGGGGTATACACTTTACAATTAGATTCTAAT
TTTCGTGGATTTAAATATGAGTTTTTAGTATTAATAAAAGGCAATGATAGTTATTAG

Upstream 100 bases:

>100_bases
CAGCATATCTTAGCTTTAATAGCTAATAGTAAAGCTTTTTATTTAAATGAAAATTGACTAAAAAAGTGAAATAAAATTAA
GTTAATCAAGGAATAAAATT

Downstream 100 bases:

>100_bases
CTTAAACTCACAATCTATTAAAATTTTGCCTACTTTATTTTATGGGAATAATTATTTTCAAATAGGAATTGATATTATAA
CTTATATACCTTTTCCATGA

Product: SH3, type 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTLNSSDLVTQESSPVIITPPTS
GCKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFISVADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPG
SDLAIVRGEIIGTGSHNYQVRMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSN
FRGFKYEFLVLIKGNDSY

Sequences:

>Translated_258_residues
MSLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTLNSSDLVTQESSPVIITPPTS
GCKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFISVADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPG
SDLAIVRGEIIGTGSHNYQVRMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSN
FRGFKYEFLVLIKGNDSY
>Mature_257_residues
SLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTLNSSDLVTQESSPVIITPPTSG
CKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFISVADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPGS
DLAIVRGEIIGTGSHNYQVRMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSNF
RGFKYEFLVLIKGNDSY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28353; Mature: 28221

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTL
CCCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCC
NSSDLVTQESSPVIITPPTSGCKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFIS
CCCCEEEECCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEE
VADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPGSDLAIVRGEIIGTGSHNYQV
EECCCCCEEEECCCHHHHHHHCCHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCCCEEE
RMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSN
EEEECCEEEEHHHHCHHHHHCCCCHHHEECCCEEEEECCCCCEEECCCCCEEEEEEECCC
FRGFKYEFLVLIKGNDSY
CCCEEEEEEEEEECCCCC
>Mature Secondary Structure 
SLHKRNLILAAITGFASTASIFYLTLQSNSSQFASNYLQKQKLHSNLVSTKLQPSFSTL
CCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCC
NSSDLVTQESSPVIITPPTSGCKIVMAIVDDPEGPLNVRSIPEVKEGNIVGQLNNNTFIS
CCCCEEEECCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEE
VADEQSGWLQITNPLRGWVAKSRTRSSCARVEQTITFSPGSDLAIVRGEIIGTGSHNYQV
EECCCCCEEEECCCHHHHHHHCCHHHHHHHHEEEEEECCCCCEEEEEEEEEECCCCCEEE
RMIQGQSLTIKNLGDVFPAIISPDDQLMTREPKIYIQGNESEWTGTMPVSGVYTLQLDSN
EEEECCEEEEHHHHCHHHHHCCCCHHHEECCCEEEEECCCCCEEECCCCCEEEEEEECCC
FRGFKYEFLVLIKGNDSY
CCCEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA