BacMap

Definition	Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession	NC_008312
Length	7,750,108

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The map label for this gene is fabG [H]

Identifier: 113474545

GI number: 113474545

Start: 1132247

End: 1132966

Strand: Direct

Name: fabG [H]

Synonym: Tery_0698

Alternate gene names: 113474545

Gene position: 1132247-1132966 (Clockwise)

Preceding gene: 113474544

Following gene: 113474546

Centisome position: 14.61

GC content: 39.31

Gene sequence:

>720_bases
ATGCTAAAAAAAGCACTTGTGACAGGTTCAGGAGTGGGAATAGGTAGGGCGATCGCTCTTGACTTAGCTGAGAAAGGATT
TGATGTAGCATTTCACTATAACCGGAATGCCGAGGCAGCTAACCAAGCAAGTCAAGAAGCAGCTACCTACGGAGTCAAAT
CTATTGCTCTACAAGCAGATGTGACTAGGCCAGAGTCAGCTCAATGTTTAGTAGAAAATGCAGCAGAAAAACTTGGAGGT
TTATCAGTAGTAGTCAATAATGTGGGCAACTTTTTAGGAAGACCTACTAGCAAAATATCCATAGCAGAGTGGCAGGAAGT
TATTGACTCTAACCTCAATTCCAATTTCTATGTTACTACAGCAGCACTCCCCCATCTGAAAGCAGCTAATGGGGCACGAA
TAGTTAATTTTGCTTGCGCTCATGCTCAAAATGTGGTAGCACGAAAGACAAATACGGCTTATGTAATTGCCAAAACAGGG
ATTATCATCTATAGTAAGTCTCTGGCTCAAGAGCTGATTAAAGACAAAATTACTGTTAATGTAGTATCTCCTGGAATAGC
TGAGAATTCTTTTGACCTAGAAGAAATGATTCCTAAGTTACCTGCTAAACGTCCAGCAACTTTGCGAGAAATTAATCATG
CAGTTTGGTTTTTTATTAATCCTAATTCTGATTATATTACAGGACAAATTATAGAAGTATCTGGTGGTTGGAATTTATAG

Upstream 100 bases:

>100_bases
AAATGATATGATTAGAACTCATGAAGTTGCTAAAGTTAAAGCTCTTTTAGAAACTCTGAGTTGCTTGTGATAGTTTAGAT
AGAACTTAATATTCAAGACA

Downstream 100 bases:

>100_bases
ACAGGAAATAGGGAATATCAAAGGCAAAAGATAGAAGCTAGAAGGGAAGAAAAAGCACTTATGGGAGAAGTTTTTTTTAT
GATTGATGATCCGGATATGA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLKKALVTGSGVGIGRAIALDLAEKGFDVAFHYNRNAEAANQASQEAATYGVKSIALQADVTRPESAQCLVENAAEKLGG
LSVVVNNVGNFLGRPTSKISIAEWQEVIDSNLNSNFYVTTAALPHLKAANGARIVNFACAHAQNVVARKTNTAYVIAKTG
IIIYSKSLAQELIKDKITVNVVSPGIAENSFDLEEMIPKLPAKRPATLREINHAVWFFINPNSDYITGQIIEVSGGWNL

Sequences:

>Translated_239_residues
MLKKALVTGSGVGIGRAIALDLAEKGFDVAFHYNRNAEAANQASQEAATYGVKSIALQADVTRPESAQCLVENAAEKLGG
LSVVVNNVGNFLGRPTSKISIAEWQEVIDSNLNSNFYVTTAALPHLKAANGARIVNFACAHAQNVVARKTNTAYVIAKTG
IIIYSKSLAQELIKDKITVNVVSPGIAENSFDLEEMIPKLPAKRPATLREINHAVWFFINPNSDYITGQIIEVSGGWNL
>Mature_239_residues
MLKKALVTGSGVGIGRAIALDLAEKGFDVAFHYNRNAEAANQASQEAATYGVKSIALQADVTRPESAQCLVENAAEKLGG
LSVVVNNVGNFLGRPTSKISIAEWQEVIDSNLNSNFYVTTAALPHLKAANGARIVNFACAHAQNVVARKTNTAYVIAKTG
IIIYSKSLAQELIKDKITVNVVSPGIAENSFDLEEMIPKLPAKRPATLREINHAVWFFINPNSDYITGQIIEVSGGWNL

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=30.46875, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=32, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=32.9411764705882, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=28.7449392712551, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4504505, Length=187, Percent_Identity=31.5508021390374, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=29.5336787564767, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4503301, Length=211, Percent_Identity=29.8578199052133, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=28.9795918367347, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=24.6963562753036, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=30.8900523560209, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI22507405, Length=227, Percent_Identity=27.7533039647577, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=30.6451612903226, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=32.7935222672065, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=27.7551020408163, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=28.099173553719, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=26.7489711934156, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=28.2868525896414, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=30.9160305343511, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=27.0491803278689, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=23.9837398373984, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=25.8687258687259, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=31.4516129032258, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=25.8823529411765, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=31.0344827586207, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=25.3846153846154, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=29.0076335877863, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=29.1666666666667, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=30.7984790874525, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=29.277566539924, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=29.2682926829268, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=28.7878787878788, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=26.5873015873016, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=28.9473684210526, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=29.5019157088123, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=30.1526717557252, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=29.811320754717, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=29.811320754717, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=29.5454545454545, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=25.1908396946565, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=28.9156626506024, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=248, Percent_Identity=26.2096774193548, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=30.0380228136882, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=27.4131274131274, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=242, Percent_Identity=25.6198347107438, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=220, Percent_Identity=25.4545454545455, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=214, Percent_Identity=29.9065420560748, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=235, Percent_Identity=24.2553191489362, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=30.3030303030303, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=28.968253968254, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=187, Percent_Identity=26.2032085561497, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=29.6, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=29.0322580645161, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=29.2307692307692, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=26.6129032258064, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI18859837, Length=245, Percent_Identity=28.1632653061224, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=30.4878048780488, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=26.6932270916335, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357673, Length=219, Percent_Identity=25.1141552511416, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=26, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 25652; Mature: 25652

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKALVTGSGVGIGRAIALDLAEKGFDVAFHYNRNAEAANQASQEAATYGVKSIALQAD
CCCCEEECCCCCCCCHHEEEEHHHCCCEEEEEECCCCCHHHHHHHHHHHHCHHHEEEEEC
VTRPESAQCLVENAAEKLGGLSVVVNNVGNFLGRPTSKISIAEWQEVIDSNLNSNFYVTT
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCEEEEE
AALPHLKAANGARIVNFACAHAQNVVARKTNTAYVIAKTGIIIYSKSLAQELIKDKITVN
ECCCCCCCCCCCEEEEEHHHHHHHHHEECCCCEEEEEECCEEEEEHHHHHHHHHCCEEEE
VVSPGIAENSFDLEEMIPKLPAKRPATLREINHAVWFFINPNSDYITGQIIEVSGGWNL
EECCCCCCCCCCHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCCEEEEEEEEECCCCCC
>Mature Secondary Structure
MLKKALVTGSGVGIGRAIALDLAEKGFDVAFHYNRNAEAANQASQEAATYGVKSIALQAD
CCCCEEECCCCCCCCHHEEEEHHHCCCEEEEEECCCCCHHHHHHHHHHHHCHHHEEEEEC
VTRPESAQCLVENAAEKLGGLSVVVNNVGNFLGRPTSKISIAEWQEVIDSNLNSNFYVTT
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCEEEEE
AALPHLKAANGARIVNFACAHAQNVVARKTNTAYVIAKTGIIIYSKSLAQELIKDKITVN
ECCCCCCCCCCCEEEEEHHHHHHHHHEECCCCEEEEEECCEEEEEHHHHHHHHHCCEEEE
VVSPGIAENSFDLEEMIPKLPAKRPATLREINHAVWFFINPNSDYITGQIIEVSGGWNL
EECCCCCCCCCCHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCCEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA