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The map label for this gene is rfaQ [C]

Identifier: 113474466

GI number: 113474466

Start: 988174

End: 989139

Strand: Direct

Name: rfaQ [C]

Synonym: Tery_0610

Alternate gene names: 113474466

Gene position: 988174-989139 (Clockwise)

Preceding gene: 113474464

Following gene: 113474468

Centisome position: 12.75

GC content: 40.89

Gene sequence:

>966_bases
ATGAGAATACTAGCCCTTGTCCCAGGTGGAATAGGCGACCAAATTTTATTCTTTCCTACTCTTGATGACCTTAAACAATC
CTATCGTGAATCTCAAATTGACGTAATTGTAGAACCTCGTTCGAAGGGTGCATATCAAGTCTGTAAGTCAGTGCGAGATG
TTCTAACCTACGACTTTAAAGATGCCAATAGTCTCGCCGACTGGGGCAACCTCTTAGGTATAATGCGCGATCGCGAATAC
GAAGCTGTAATTTCCCTGGGACAACGCTGGACAGTTGGCTTATTGTTATGGTTAACAGGAATTCCTAAACGGGTAGGTTA
TGCAGGTAATGGAGGAATATTCCTCTCAGACCCTATACCCCTGAAAACTGAACAATATGCAGCCCACATGTACCATGATT
TGTTGCAAGGGATGAATATTAATACTACTTTTAAAGGAATCTCAATTAATGTGCTCAAGAAAGATATTGCTTGGGCCGAA
GCTGAACAGCAAAGATTAGGAGTTGCAGAAAGTGGGTATATTTTGATTCATGGTGGTTCGAGTAAACTAGCTCAGATTAA
AGGTATTGATAAAATTTACCCTACTAATTACTGGCTCGAGATTATTTCTCAACTGCAACAGAAACAACCTAACTTACCAG
TAGTATTGGTTAAAGGTCCTGAAGACGGAGCTTGGAGCAGTGAAATTAGCCAATCTTCTCGAGATGTAAAAATAGTCATA
CCTGGGGATGTGGGTAAATTAGCTGCTTTTATTGCGGCAGCCAATTTAATGTTATGCACTGATAGTGCGCCAATGCACTT
AGCAGTGGCAGTTGGGACATATACTATTGCTCTTTTTGGTCCAACAGATCCAAAAAAATTATTACCCAAGAGCGATCGGG
TAATTGCAGTTAAATCTTCTACTGGGAAAATGGCAGATATCTTACCCCAGCAAGTCTTACAGAAAATTTGGGGCACAGAG
GGTTAA

Upstream 100 bases:

>100_bases
ACTTGAGTTGCAAATGCTTATATTTAACTGTATTTACATATAATATTCATCATACTTTACTTAAAATTGAACTGATAATT
AACTTTAACTCTTAAAAATT

Downstream 100 bases:

>100_bases
ACAAGGAAAGAGGAAATATTCTCGGCTCTGCATAGATAGGCAATGATTTTAATAATTTTGTAGAAAAGGTTTAATGCCAT
TATGGTGTTTCTTAAGTATG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Glycosyl Transferase Family Protein; Heptosyltransferase Family Protein; ADP-Heptose-LPS Heptosyltransferase II; ADP-HeptoseLPS Heptosyltransferase; Heptosyltransferase Superfamily; Glycosyltransferase; Glycosyl Transferase; ADP-Heptose-LPS Heptosyltransferase II RfaF; LPS Biosynthesis; Heptosyltransferase Family; Family Glycosyltransferase; ADP-HeptoseLPS Heptosyltransferase II; Heptosyl Transferase Glycosyltransferase Family 9 Protein; Heptosyltransferase; Lipopolysaccharide Glucosyltransferase; O-Antigen Polymerase; Lipopolysaccharide Heptosyltransferase; Lipopolysaccharide Heptosyltransferase III; Heptosyl III Transferase WaaQ; Family 9 Glycosyl Transferase

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MRILALVPGGIGDQILFFPTLDDLKQSYRESQIDVIVEPRSKGAYQVCKSVRDVLTYDFKDANSLADWGNLLGIMRDREY
EAVISLGQRWTVGLLLWLTGIPKRVGYAGNGGIFLSDPIPLKTEQYAAHMYHDLLQGMNINTTFKGISINVLKKDIAWAE
AEQQRLGVAESGYILIHGGSSKLAQIKGIDKIYPTNYWLEIISQLQQKQPNLPVVLVKGPEDGAWSSEISQSSRDVKIVI
PGDVGKLAAFIAAANLMLCTDSAPMHLAVAVGTYTIALFGPTDPKKLLPKSDRVIAVKSSTGKMADILPQQVLQKIWGTE
G

Sequences:

>Translated_321_residues
MRILALVPGGIGDQILFFPTLDDLKQSYRESQIDVIVEPRSKGAYQVCKSVRDVLTYDFKDANSLADWGNLLGIMRDREY
EAVISLGQRWTVGLLLWLTGIPKRVGYAGNGGIFLSDPIPLKTEQYAAHMYHDLLQGMNINTTFKGISINVLKKDIAWAE
AEQQRLGVAESGYILIHGGSSKLAQIKGIDKIYPTNYWLEIISQLQQKQPNLPVVLVKGPEDGAWSSEISQSSRDVKIVI
PGDVGKLAAFIAAANLMLCTDSAPMHLAVAVGTYTIALFGPTDPKKLLPKSDRVIAVKSSTGKMADILPQQVLQKIWGTE
G
>Mature_321_residues
MRILALVPGGIGDQILFFPTLDDLKQSYRESQIDVIVEPRSKGAYQVCKSVRDVLTYDFKDANSLADWGNLLGIMRDREY
EAVISLGQRWTVGLLLWLTGIPKRVGYAGNGGIFLSDPIPLKTEQYAAHMYHDLLQGMNINTTFKGISINVLKKDIAWAE
AEQQRLGVAESGYILIHGGSSKLAQIKGIDKIYPTNYWLEIISQLQQKQPNLPVVLVKGPEDGAWSSEISQSSRDVKIVI
PGDVGKLAAFIAAANLMLCTDSAPMHLAVAVGTYTIALFGPTDPKKLLPKSDRVIAVKSSTGKMADILPQQVLQKIWGTE
G

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35195; Mature: 35195

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILALVPGGIGDQILFFPTLDDLKQSYRESQIDVIVEPRSKGAYQVCKSVRDVLTYDFK
CEEEEEECCCCCCCEEEECCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHEECCC
DANSLADWGNLLGIMRDREYEAVISLGQRWTVGLLLWLTGIPKRVGYAGNGGIFLSDPIP
CCCCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEECCCCC
LKTEQYAAHMYHDLLQGMNINTTFKGISINVLKKDIAWAEAEQQRLGVAESGYILIHGGS
CCHHHHHHHHHHHHHCCCCCCEEECCEEEEEEHHHHHHHHHHHHHCCCCCCCEEEEECCC
SKLAQIKGIDKIYPTNYWLEIISQLQQKQPNLPVVLVKGPEDGAWSSEISQSSRDVKIVI
CCCHHHCCCCHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHCCCCCEEEEE
PGDVGKLAAFIAAANLMLCTDSAPMHLAVAVGTYTIALFGPTDPKKLLPKSDRVIAVKSS
CCCHHHHHHHHHHCCEEEEECCCCCEEEEEEEEEEEEEECCCCHHHHCCCCCCEEEEECC
TGKMADILPQQVLQKIWGTEG
CCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRILALVPGGIGDQILFFPTLDDLKQSYRESQIDVIVEPRSKGAYQVCKSVRDVLTYDFK
CEEEEEECCCCCCCEEEECCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHEECCC
DANSLADWGNLLGIMRDREYEAVISLGQRWTVGLLLWLTGIPKRVGYAGNGGIFLSDPIP
CCCCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEECCCCC
LKTEQYAAHMYHDLLQGMNINTTFKGISINVLKKDIAWAEAEQQRLGVAESGYILIHGGS
CCHHHHHHHHHHHHHCCCCCCEEECCEEEEEEHHHHHHHHHHHHHCCCCCCCEEEEECCC
SKLAQIKGIDKIYPTNYWLEIISQLQQKQPNLPVVLVKGPEDGAWSSEISQSSRDVKIVI
CCCHHHCCCCHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHCCCCCEEEEE
PGDVGKLAAFIAAANLMLCTDSAPMHLAVAVGTYTIALFGPTDPKKLLPKSDRVIAVKSS
CCCHHHHHHHHHHCCEEEEECCCCCEEEEEEEEEEEEEECCCCHHHHCCCCCCEEEEECC
TGKMADILPQQVLQKIWGTEG
CCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA