| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474454
Identifier: 113474454
GI number: 113474454
Start: 961521
End: 963302
Strand: Direct
Name: 113474454
Synonym: Tery_0598
Alternate gene names: NA
Gene position: 961521-963302 (Clockwise)
Preceding gene: 113474453
Following gene: 113474455
Centisome position: 12.41
GC content: 30.13
Gene sequence:
>1782_bases ATGGCAACTATTGAATCTAAAGGCATGAATTTAGAAAAGTTATTTGATGAATTTTATGTTATTCCTGATTACCAGCGCGA ATATGTTTGGACACAAAAAGAAGTCAATGAATTTATTCAAGACATCTATGAAGAATTTTCTGAACAAACTCAAAACTCTT ACCCTGAGTATTTTATTGGCAGTATAATTGTTTGTGGTCGCGGGGAAAAATTTTATGAAATAATTGATGGCCAGCAACGA ATTACTACTGCTTACCTTGTACTATGTGCAATTCGGGATTATCTATTAACTATTAATCCTAATGAACCTATTGAAGCATT AAAAAATAAGATTGCTGCTTTGTATACGGATAACTGGGGTAATGACCAGTTTAGACACAAAGTAGAACTACAATATCAGG AAAGTCGAGGAATACTAGAAAATATAGCTCTACAAGCAAGTGTAGAGACTCTTAGTCCAACTCGCTCTGTTAAAAATATT CAGAATGCTTATACTGAAATTAGAAGTTTTCTTTACCAATATTTTCAAGTAGATGAACTTGTTGTTTTTAATATCAAAAA GTTTTACGCATATTTTCTTAAAAATGTTAAGTTAATTCGAGTCAAAACAGCTAGTGTTTCTCATGCTTTGAAAATATATT CAACTCTAAATCATCGTGGTTTAGCCCTAGATGATATGGATTTACTCAAAAATTTAATTTTTACTAAAGCTAAATCAACA GATTATGATCAAATCAAAGTAAAATGGAAAACAATGATAGACTTGCTTTATAATCATCAAGAAAAACCCATGCGTTTTTT GCGCTATTTTATATTAGCCAAATACGCAAAAGATGGGAACTATATTTTGGAAAAAGAAGTCTATGATTGGTTCCTAAATA ATGAACATATTTGTAGATATAAGACTGAACCGATTCAGTTTGTGAATAATTTACTGAGCTCGGCTCAAGCTTATGTAGCA TTTTTAATAGGTAATAATGTTGATGGTACTGTTAATCGGTATTTGGTAAATATTAGAAATCTTAGTATAAATGTTAGGCA GCATTTAATATTACTTTTAGCTGTTGATAAGTTGCCTAAAGCTTGTTTTGTTGATCTCTGTAGACAGATAGAGAATTTAT TATTTTTGGCAATGTTAACTAGCGATCGCCATAAAAAAGCATTTGATGGCATGATAATTAAGTGGGCAAGTGAGTTACGT ACAATTAGTTCACAAGAGGATTATGATATTTTTATTGCTCAGGAAATTATTCCTAGCAAACAGGGAGTAGCTGATAAATT TGAAAATACGTTCTATCGACTGAATAAATTATCATTACAGCTATATCAAATTCGATATATTTTGGCAAAGATAACACAAT ATATAGATGAAATGGCCTGGGGAACTGTGGGAGGAATTGATGATTTAAGAAACTATGTTTTTAAATTAGAAGTAGAACAA ATTTTATCAGAAAACCCTACAAAAGAAGTAGTTTTTGATTTTGATAAACCTACTGAAATAGTAAACTATAGTCAACGTTT AGGAAATATGACTTTGTTAGAAAGTTCTATTAAATCTGCTATTTTAAATGCTAGTTTTACTGAGAAAAAATTAGGTTATA CAAAATCTAGATTTTTGTTAACTAGAACTATTGCTGAAGAAATTTCGGTGGGAAACAATACAACTATTAATTTGGCTGTC AAGGATTTAAAGACATTTGAAAAATGGGATTCTCAAGCAATAGAAACTCGTCAAGAAATTTTAACTCAATTAGCTAAAAA AGTTTGGGATGTTCCTGAGTAA
Upstream 100 bases:
>100_bases TGAAAAAAAATTGAGGGAATTGAGATAAATTGATATGAGAAAAATATTTTTATTCTGGATAATTAATGAGACTTGATACT AAAGCTATTGAGGTAATTAT
Downstream 100 bases:
>100_bases TCTCCAACTTATTTTATGAAAAACTCTTTATAGTATGGTTTAATTAGCAAAGGTCTACTATGCTACTTTATCTAAAATCT ACAAAATAACTAGGATAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 593; Mature: 592
Protein sequence:
>593_residues MATIESKGMNLEKLFDEFYVIPDYQREYVWTQKEVNEFIQDIYEEFSEQTQNSYPEYFIGSIIVCGRGEKFYEIIDGQQR ITTAYLVLCAIRDYLLTINPNEPIEALKNKIAALYTDNWGNDQFRHKVELQYQESRGILENIALQASVETLSPTRSVKNI QNAYTEIRSFLYQYFQVDELVVFNIKKFYAYFLKNVKLIRVKTASVSHALKIYSTLNHRGLALDDMDLLKNLIFTKAKST DYDQIKVKWKTMIDLLYNHQEKPMRFLRYFILAKYAKDGNYILEKEVYDWFLNNEHICRYKTEPIQFVNNLLSSAQAYVA FLIGNNVDGTVNRYLVNIRNLSINVRQHLILLLAVDKLPKACFVDLCRQIENLLFLAMLTSDRHKKAFDGMIIKWASELR TISSQEDYDIFIAQEIIPSKQGVADKFENTFYRLNKLSLQLYQIRYILAKITQYIDEMAWGTVGGIDDLRNYVFKLEVEQ ILSENPTKEVVFDFDKPTEIVNYSQRLGNMTLLESSIKSAILNASFTEKKLGYTKSRFLLTRTIAEEISVGNNTTINLAV KDLKTFEKWDSQAIETRQEILTQLAKKVWDVPE
Sequences:
>Translated_593_residues MATIESKGMNLEKLFDEFYVIPDYQREYVWTQKEVNEFIQDIYEEFSEQTQNSYPEYFIGSIIVCGRGEKFYEIIDGQQR ITTAYLVLCAIRDYLLTINPNEPIEALKNKIAALYTDNWGNDQFRHKVELQYQESRGILENIALQASVETLSPTRSVKNI QNAYTEIRSFLYQYFQVDELVVFNIKKFYAYFLKNVKLIRVKTASVSHALKIYSTLNHRGLALDDMDLLKNLIFTKAKST DYDQIKVKWKTMIDLLYNHQEKPMRFLRYFILAKYAKDGNYILEKEVYDWFLNNEHICRYKTEPIQFVNNLLSSAQAYVA FLIGNNVDGTVNRYLVNIRNLSINVRQHLILLLAVDKLPKACFVDLCRQIENLLFLAMLTSDRHKKAFDGMIIKWASELR TISSQEDYDIFIAQEIIPSKQGVADKFENTFYRLNKLSLQLYQIRYILAKITQYIDEMAWGTVGGIDDLRNYVFKLEVEQ ILSENPTKEVVFDFDKPTEIVNYSQRLGNMTLLESSIKSAILNASFTEKKLGYTKSRFLLTRTIAEEISVGNNTTINLAV KDLKTFEKWDSQAIETRQEILTQLAKKVWDVPE >Mature_592_residues ATIESKGMNLEKLFDEFYVIPDYQREYVWTQKEVNEFIQDIYEEFSEQTQNSYPEYFIGSIIVCGRGEKFYEIIDGQQRI TTAYLVLCAIRDYLLTINPNEPIEALKNKIAALYTDNWGNDQFRHKVELQYQESRGILENIALQASVETLSPTRSVKNIQ NAYTEIRSFLYQYFQVDELVVFNIKKFYAYFLKNVKLIRVKTASVSHALKIYSTLNHRGLALDDMDLLKNLIFTKAKSTD YDQIKVKWKTMIDLLYNHQEKPMRFLRYFILAKYAKDGNYILEKEVYDWFLNNEHICRYKTEPIQFVNNLLSSAQAYVAF LIGNNVDGTVNRYLVNIRNLSINVRQHLILLLAVDKLPKACFVDLCRQIENLLFLAMLTSDRHKKAFDGMIIKWASELRT ISSQEDYDIFIAQEIIPSKQGVADKFENTFYRLNKLSLQLYQIRYILAKITQYIDEMAWGTVGGIDDLRNYVFKLEVEQI LSENPTKEVVFDFDKPTEIVNYSQRLGNMTLLESSIKSAILNASFTEKKLGYTKSRFLLTRTIAEEISVGNNTTINLAVK DLKTFEKWDSQAIETRQEILTQLAKKVWDVPE
Specific function: Unknown
COG id: COG1479
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69383; Mature: 69251
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIESKGMNLEKLFDEFYVIPDYQREYVWTQKEVNEFIQDIYEEFSEQTQNSYPEYFIG CCCCCCCCCCHHHHHHHHEECCCCCHHHEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHC SIIVCGRGEKFYEIIDGQQRITTAYLVLCAIRDYLLTINPNEPIEALKNKIAALYTDNWG CEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHEEEEECCCC NDQFRHKVELQYQESRGILENIALQASVETLSPTRSVKNIQNAYTEIRSFLYQYFQVDEL CCCCEEEEEEEEHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVFNIKKFYAYFLKNVKLIRVKTASVSHALKIYSTLNHRGLALDDMDLLKNLIFTKAKST HHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC DYDQIKVKWKTMIDLLYNHQEKPMRFLRYFILAKYAKDGNYILEKEVYDWFLNNEHICRY CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCEEEE KTEPIQFVNNLLSSAQAYVAFLIGNNVDGTVNRYLVNIRNLSINVRQHLILLLAVDKLPK CCCHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHEEEEECCEEEHHHHHHHHHHHHHCCH ACFVDLCRQIENLLFLAMLTSDRHKKAFDGMIIKWASELRTISSQEDYDIFIAQEIIPSK HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEHHHCCCC QGVADKFENTFYRLNKLSLQLYQIRYILAKITQYIDEMAWGTVGGIDDLRNYVFKLEVEQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ILSENPTKEVVFDFDKPTEIVNYSQRLGNMTLLESSIKSAILNASFTEKKLGYTKSRFLL HHCCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHH TRTIAEEISVGNNTTINLAVKDLKTFEKWDSQAIETRQEILTQLAKKVWDVPE HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ATIESKGMNLEKLFDEFYVIPDYQREYVWTQKEVNEFIQDIYEEFSEQTQNSYPEYFIG CCCCCCCCCHHHHHHHHEECCCCCHHHEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHC SIIVCGRGEKFYEIIDGQQRITTAYLVLCAIRDYLLTINPNEPIEALKNKIAALYTDNWG CEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHEEEEECCCC NDQFRHKVELQYQESRGILENIALQASVETLSPTRSVKNIQNAYTEIRSFLYQYFQVDEL CCCCEEEEEEEEHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVFNIKKFYAYFLKNVKLIRVKTASVSHALKIYSTLNHRGLALDDMDLLKNLIFTKAKST HHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC DYDQIKVKWKTMIDLLYNHQEKPMRFLRYFILAKYAKDGNYILEKEVYDWFLNNEHICRY CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCEEEE KTEPIQFVNNLLSSAQAYVAFLIGNNVDGTVNRYLVNIRNLSINVRQHLILLLAVDKLPK CCCHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHEEEEECCEEEHHHHHHHHHHHHHCCH ACFVDLCRQIENLLFLAMLTSDRHKKAFDGMIIKWASELRTISSQEDYDIFIAQEIIPSK HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEHHHCCCC QGVADKFENTFYRLNKLSLQLYQIRYILAKITQYIDEMAWGTVGGIDDLRNYVFKLEVEQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ILSENPTKEVVFDFDKPTEIVNYSQRLGNMTLLESSIKSAILNASFTEKKLGYTKSRFLL HHCCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHH TRTIAEEISVGNNTTINLAVKDLKTFEKWDSQAIETRQEILTQLAKKVWDVPE HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA