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The map label for this gene is ydcM [C]

Identifier: 113474231

GI number: 113474231

Start: 538091

End: 539179

Strand: Reverse

Name: ydcM [C]

Synonym: Tery_0348

Alternate gene names: 113474231

Gene position: 539179-538091 (Counterclockwise)

Preceding gene: 113474232

Following gene: 113474230

Centisome position: 6.96

GC content: 37.74

Gene sequence:

>1089_bases
ATGGTTGAAAAAGCATACAAATTTAGATTTTACCCAACTCCTCAGCAGGAAAGTCTGGTGAGGAAAACATTGGGCTGTGT
GCGTTTAGTCTACAACAAAGCTTTAGCTGTCAGAACTCAAGCTTGGTATGAATACCAGGAACGAGTAGGTTACAAACAAA
CCTCACCTATGCTGATCAACTGGAAAAAACAGGAAGATTTAGATTTTCTAACTGAAGTAAGTATTGTACCGCTCCAGCAA
GGCTTAAGACACTTACAAACTGCTTTCAACAACTTTTTTAGCGGACGAACTAAATATCCTAAATTAAAAAAAAAGTGCCA
CGGTGGCAGTACTGAGTTGACTAAGGCAGCCTTTAAGTGTAAAGATGGCCAAGTCTATATTAATTTAGGAATCAACAGCT
TAGTAACTACTAGCGATGGAGCAAAAGTCGCCTACCCAAAGAATCTTCAAAAGTTACACAAAAAATTAAGGCGTGATCAA
AAGTCTCTAAGTAGAAAAAGAGGTAAAAAGTCTAATAATTATCAGAAAGCTAGACTTCAAATAGCAAAGATACACGCCTT
AATTAAAGACTCAAGACTAGACTACACCCATAAGCTAACAACTAAACTGATTAGAGAAAACCAAACTATTGTAGTTGATG
ATCTAGCTGCAGGTAACATGGTCAAGAATCATAAATTAGCTAGAGCAATAAATGATGCTAATTGGGTAGAATTACTGAGA
CAATTAGAATACAAAGCTGAATGGTATGGTGGTACATTAATAAAAATTAAGAGATATTTTCTCAGTTCTAAACGTTGTTC
TAATTGTGGTCATGTAGTAGAAAAATTACCTTTAAATATTAGAGCATGGGACTGTCCTGAATGTGCTAGTCACCATGACA
GGGACATAAACGCAAGTATAAACATTTTGGCTGCTGGGCAGGCAGTGTCAGTCTGGGTCGCGACTGTAAGACCTGAAGAG
AGTAAATCTCAGAGGGCAAGTGCTATGAAGCAGAAAGCGCTTAACACTGATGCTAAAGAATCCCTTGCTGTCTCAAGTAC
AGCAGCGCCGGGAGGATGTCAATTAAGAATTGAATTTAGGAAACACTAA

Upstream 100 bases:

>100_bases
TCCTTATAAGCGATAGCTTTCCAAGGGGGATGAATGCCAATCAATCTTGCGGTTTTACAAATAATCTGTTAGAATTTAGA
TGTTGAAAAGTAAGCAGTAG

Downstream 100 bases:

>100_bases
GCTTATGACAAACACTATTTTAAAATCTTCTACTCATCCACTTTCAGCTTATATAAACCGCTTAAAATCTGGTCAAGCTC
TGCTCAAGGATAGCCCAGAA

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MVEKAYKFRFYPTPQQESLVRKTLGCVRLVYNKALAVRTQAWYEYQERVGYKQTSPMLINWKKQEDLDFLTEVSIVPLQQ
GLRHLQTAFNNFFSGRTKYPKLKKKCHGGSTELTKAAFKCKDGQVYINLGINSLVTTSDGAKVAYPKNLQKLHKKLRRDQ
KSLSRKRGKKSNNYQKARLQIAKIHALIKDSRLDYTHKLTTKLIRENQTIVVDDLAAGNMVKNHKLARAINDANWVELLR
QLEYKAEWYGGTLIKIKRYFLSSKRCSNCGHVVEKLPLNIRAWDCPECASHHDRDINASINILAAGQAVSVWVATVRPEE
SKSQRASAMKQKALNTDAKESLAVSSTAAPGGCQLRIEFRKH

Sequences:

>Translated_362_residues
MVEKAYKFRFYPTPQQESLVRKTLGCVRLVYNKALAVRTQAWYEYQERVGYKQTSPMLINWKKQEDLDFLTEVSIVPLQQ
GLRHLQTAFNNFFSGRTKYPKLKKKCHGGSTELTKAAFKCKDGQVYINLGINSLVTTSDGAKVAYPKNLQKLHKKLRRDQ
KSLSRKRGKKSNNYQKARLQIAKIHALIKDSRLDYTHKLTTKLIRENQTIVVDDLAAGNMVKNHKLARAINDANWVELLR
QLEYKAEWYGGTLIKIKRYFLSSKRCSNCGHVVEKLPLNIRAWDCPECASHHDRDINASINILAAGQAVSVWVATVRPEE
SKSQRASAMKQKALNTDAKESLAVSSTAAPGGCQLRIEFRKH
>Mature_362_residues
MVEKAYKFRFYPTPQQESLVRKTLGCVRLVYNKALAVRTQAWYEYQERVGYKQTSPMLINWKKQEDLDFLTEVSIVPLQQ
GLRHLQTAFNNFFSGRTKYPKLKKKCHGGSTELTKAAFKCKDGQVYINLGINSLVTTSDGAKVAYPKNLQKLHKKLRRDQ
KSLSRKRGKKSNNYQKARLQIAKIHALIKDSRLDYTHKLTTKLIRENQTIVVDDLAAGNMVKNHKLARAINDANWVELLR
QLEYKAEWYGGTLIKIKRYFLSSKRCSNCGHVVEKLPLNIRAWDCPECASHHDRDINASINILAAGQAVSVWVATVRPEE
SKSQRASAMKQKALNTDAKESLAVSSTAAPGGCQLRIEFRKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=359, Percent_Identity=28.9693593314763, Blast_Score=135, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41324; Mature: 41324

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEKAYKFRFYPTPQQESLVRKTLGCVRLVYNKALAVRTQAWYEYQERVGYKQTSPMLIN
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
WKKQEDLDFLTEVSIVPLQQGLRHLQTAFNNFFSGRTKYPKLKKKCHGGSTELTKAAFKC
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHCC
KDGQVYINLGINSLVTTSDGAKVAYPKNLQKLHKKLRRDQKSLSRKRGKKSNNYQKARLQ
CCCEEEEEECCCEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IAKIHALIKDSRLDYTHKLTTKLIRENQTIVVDDLAAGNMVKNHKLARAINDANWVELLR
HHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH
QLEYKAEWYGGTLIKIKRYFLSSKRCSNCGHVVEKLPLNIRAWDCPECASHHDRDINASI
HHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCCHHHCCCCCCCCCEE
NILAAGQAVSVWVATVRPEESKSQRASAMKQKALNTDAKESLAVSSTAAPGGCQLRIEFR
EEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCEEEEEEEE
KH
CC
>Mature Secondary Structure
MVEKAYKFRFYPTPQQESLVRKTLGCVRLVYNKALAVRTQAWYEYQERVGYKQTSPMLIN
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
WKKQEDLDFLTEVSIVPLQQGLRHLQTAFNNFFSGRTKYPKLKKKCHGGSTELTKAAFKC
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHCC
KDGQVYINLGINSLVTTSDGAKVAYPKNLQKLHKKLRRDQKSLSRKRGKKSNNYQKARLQ
CCCEEEEEECCCEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IAKIHALIKDSRLDYTHKLTTKLIRENQTIVVDDLAAGNMVKNHKLARAINDANWVELLR
HHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHH
QLEYKAEWYGGTLIKIKRYFLSSKRCSNCGHVVEKLPLNIRAWDCPECASHHDRDINASI
HHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCCHHHCCCCCCCCCEE
NILAAGQAVSVWVATVRPEESKSQRASAMKQKALNTDAKESLAVSSTAAPGGCQLRIEFR
EEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCEEEEEEEE
KH
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]