| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474097
Identifier: 113474097
GI number: 113474097
Start: 294279
End: 294905
Strand: Reverse
Name: 113474097
Synonym: Tery_0196
Alternate gene names: NA
Gene position: 294905-294279 (Counterclockwise)
Preceding gene: 113474099
Following gene: 113474096
Centisome position: 3.81
GC content: 29.67
Gene sequence:
>627_bases ATGCCAAAATCTAATCAAAGACCAAATAAAAATAAGTCTAAACCTGATAATATACACCTGAAACCAATTGAAATTGATGA GACTATTGTATCAGGAAAAACATCTAAACTGAATGGTAGAGAAAATTTAGGTAGAACTGCGCCTATTGAAGATTTTTTAC AGCATATTGATGCTTTTGAAGAGATAGTAAAAGATAATGATGAAGAAGAAAAAAATCGGAGGGAAGTTTTTGAACAAAAA TTAGAAGAAGTTTTCGGCACTACAAATTTAGAAGTTAATCGAAGTAATTTAAAAAAGTATTTAAAATATCTGAAGAAAAA TCTAAAAATTCCTTGTTTAGTTAAAGGTATGGAAGAGTTTGAATGGGAAGAATATTATACGATGGGTCCAGGAAGTACAA AAGAATATAAAAAGCTCAAAAAGACACAACCATCTTACACAGATAAGTTTAATCTTTTAAATTTAGACCAGAAATTAGAC GTCGAAGATGGAATTTTAGGTGTGTTAGAACGTACTACAGATAATTTAAAGTTTACATTGCCATTGGTTGATTTAGAAGC GGTTGCAGAAAACTCTGTTAATGCTCAATTATTAGAAGATTATGCGATGTGGTTTTTTCGTTATTGA
Upstream 100 bases:
>100_bases TGTTATTTGTGTCATAGTTTACTCGTCAGATAGATTAATGGAATTTTTTATTCTATATATATACTCTTTAAATGATAAAC CTGAATAAGGTAAGAATTAT
Downstream 100 bases:
>100_bases TAAGTGGTGAAATAATTATAGTAGTCCACACATTGGTTGTGGCAAAATTCCATACTTAAAAACTTTGGAAAAGTTGAATA TTCAAATATCGGTAACAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MPKSNQRPNKNKSKPDNIHLKPIEIDETIVSGKTSKLNGRENLGRTAPIEDFLQHIDAFEEIVKDNDEEEKNRREVFEQK LEEVFGTTNLEVNRSNLKKYLKYLKKNLKIPCLVKGMEEFEWEEYYTMGPGSTKEYKKLKKTQPSYTDKFNLLNLDQKLD VEDGILGVLERTTDNLKFTLPLVDLEAVAENSVNAQLLEDYAMWFFRY
Sequences:
>Translated_208_residues MPKSNQRPNKNKSKPDNIHLKPIEIDETIVSGKTSKLNGRENLGRTAPIEDFLQHIDAFEEIVKDNDEEEKNRREVFEQK LEEVFGTTNLEVNRSNLKKYLKYLKKNLKIPCLVKGMEEFEWEEYYTMGPGSTKEYKKLKKTQPSYTDKFNLLNLDQKLD VEDGILGVLERTTDNLKFTLPLVDLEAVAENSVNAQLLEDYAMWFFRY >Mature_207_residues PKSNQRPNKNKSKPDNIHLKPIEIDETIVSGKTSKLNGRENLGRTAPIEDFLQHIDAFEEIVKDNDEEEKNRREVFEQKL EEVFGTTNLEVNRSNLKKYLKYLKKNLKIPCLVKGMEEFEWEEYYTMGPGSTKEYKKLKKTQPSYTDKFNLLNLDQKLDV EDGILGVLERTTDNLKFTLPLVDLEAVAENSVNAQLLEDYAMWFFRY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24358; Mature: 24227
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKSNQRPNKNKSKPDNIHLKPIEIDETIVSGKTSKLNGRENLGRTAPIEDFLQHIDAFE CCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH EIVKDNDEEEKNRREVFEQKLEEVFGTTNLEVNRSNLKKYLKYLKKNLKIPCLVKGMEEF HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHCCCCCHHHHCHHHH EWEEYYTMGPGSTKEYKKLKKTQPSYTDKFNLLNLDQKLDVEDGILGVLERTTDNLKFTL CHHHEEECCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEE PLVDLEAVAENSVNAQLLEDYAMWFFRY EHHHHHHHHCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure PKSNQRPNKNKSKPDNIHLKPIEIDETIVSGKTSKLNGRENLGRTAPIEDFLQHIDAFE CCCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH EIVKDNDEEEKNRREVFEQKLEEVFGTTNLEVNRSNLKKYLKYLKKNLKIPCLVKGMEEF HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHCCCCCHHHHCHHHH EWEEYYTMGPGSTKEYKKLKKTQPSYTDKFNLLNLDQKLDVEDGILGVLERTTDNLKFTL CHHHEEECCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEE PLVDLEAVAENSVNAQLLEDYAMWFFRY EHHHHHHHHCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA