Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474099

Identifier: 113474099

GI number: 113474099

Start: 297094

End: 297624

Strand: Reverse

Name: 113474099

Synonym: Tery_0198

Alternate gene names: NA

Gene position: 297624-297094 (Counterclockwise)

Preceding gene: 113474106

Following gene: 113474097

Centisome position: 3.84

GC content: 30.32

Gene sequence:

>531_bases
ATGAAAATTAAAGCTTTAGCTCATACTATTCAACTATGTCCCCAGAGGTTGTTGTCCAGGTCTGTATTAGTAGTAACTTT
GTCTACATTAGGTTTAATGATAAATATAACACCTAGATGGTTTAACCTTTCATTAGATTCTATATTTACTACAGCAGTCT
ATGCTCAAGAATTACTCACAGATCAAGCCATTACTCCTGAAGAAATAAATAAATATGCTTTTTCAGTATTAAAAATTGAG
AATCTAAGAATAGAAGTATATAGAGAAATTAAAAATGAATTTCAAAAACGAAGTCCCGGAGGGTCTGTTCCACCAATAAT
TTGTAATGAGAAAAGTAGTGTTAATGCTTTACCAAAAAATATTCAGGTAATTGCTATGAGTTACTGCAAGCAAGCTAAAA
AAATTATTGAAGGAAATGATTTGACGGTTTCTCGGTTTAATGAAATTACACAGATCCAAAGAAAAGATAAAACTTGGCGA
GAAAAAATTCAAGCTGAATTAATTCGTATTCAACAACAAACTGGTAATTAA

Upstream 100 bases:

>100_bases
AGATTTAATATTTGATTTACAGATACTCTCTAATCTGGAACTTTTTCAGGTTAATACAATTCTATATATTATAGTTTAAT
TCTTATTTTTGATCAGAAGT

Downstream 100 bases:

>100_bases
GAAAGCAGCTTTGATAATTTTGACTATGATTTTTCTGGAAATAGCGACCACCCAATTCCTAATTAAAAAGCATTTTTAAC
TTGACAAATTTAGATTTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLTDQAITPEEINKYAFSVLKIE
NLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKNIQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWR
EKIQAELIRIQQQTGN

Sequences:

>Translated_176_residues
MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLTDQAITPEEINKYAFSVLKIE
NLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKNIQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWR
EKIQAELIRIQQQTGN
>Mature_176_residues
MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLTDQAITPEEINKYAFSVLKIE
NLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKNIQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWR
EKIQAELIRIQQQTGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20132; Mature: 20132

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLT
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCEEEECCCCCEECCHHHHHHHHHHHHHHHH
DQAITPEEINKYAFSVLKIENLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCH
IQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWREKIQAELIRIQQQTGN
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLT
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCEEEECCCCCEECCHHHHHHHHHHHHHHHH
DQAITPEEINKYAFSVLKIENLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCH
IQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWREKIQAELIRIQQQTGN
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA