Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474083

Identifier: 113474083

GI number: 113474083

Start: 266150

End: 266914

Strand: Reverse

Name: 113474083

Synonym: Tery_0179

Alternate gene names: NA

Gene position: 266914-266150 (Counterclockwise)

Preceding gene: 113474087

Following gene: 113474080

Centisome position: 3.44

GC content: 40.13

Gene sequence:

>765_bases
ATGCCTAGAAAACCACGTCAACTTTTGCCTCAATATTCCGATCATGTTACTTGTCGTTGCAACAACCGAGAGTTTCGTTT
GACTCGTCTCCAATGTCGTCAGGTTTTTTTGTTTGCCTTAAAAAAAGCTTTGGATAAGTTTGGCTTTAAACTTTATGCTC
TATGCATTATGAGTAACCATATTCATTATTTACTAGAGCCATCCATTCGGGAAGACTTACCGAAAATTATGCACTGGTTA
AACTGGTATACGGCTATGTGTTTTAATCAAATGCTTAACCGTACCGGGCATTTTTGGGAGAAGAGATACCATAGTACCGG
GTTTGAAAATACTGATAAAAAACGAGCTTTGAATACTCTTCGCTATATTCACGCTAACCCAAAAGCAGCTAATATGCAGT
CTGGGTTTTTCTATGACTTTTCTAACTATGGCACTTATGACCGCCTCACTGATGATGGTCTCACAAAGTGGCATCCTGCT
TTTTTGTCTCTGGGAAAAACTCTTGATGAATGTGCTAAAAACTATAGGAAATTTTGTCACAAATACAAACCTCGACCAAA
ACCGGAAAAGCGTAGTCGTTGGGGTAGTAGGTTTTTGCCTAAGGTGAAAAAAAAGAAAAAGAATAAGGTTTCTCCAGGAC
AAATGCGACTTCCTTGGGCAGACTGGGAACCTCCCTCAAATTTGGTGGCGGAGGTAGCCAGGCAGTTTGTTTTGGCAAAT
TGTTATGACCCGGAGGCGGCTATGAAATTTTTCGATGATCAGTAA

Upstream 100 bases:

>100_bases
ACGCACTCACCCTGATAATGTTTTGCCGCAGAACCGGGGGAAACTTAACATATTTAATTCTGTTGGGTTTCAAATATATC
CGACTATCTCTTAACTGATA

Downstream 100 bases:

>100_bases
TGACATATCGCAGTGTGGCCAAAATTAAAGTGTTTAGTTAATTTTTAAACCTAAAACCTAAAAACTAACACTTAAAACCA
TTAACCTAATACCTAATACC

Product: hypothetical protein

Products: NA

Alternate protein names: Transposase And Inactivated Derivatives; Conserved Domain Protein

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MPRKPRQLLPQYSDHVTCRCNNREFRLTRLQCRQVFLFALKKALDKFGFKLYALCIMSNHIHYLLEPSIREDLPKIMHWL
NWYTAMCFNQMLNRTGHFWEKRYHSTGFENTDKKRALNTLRYIHANPKAANMQSGFFYDFSNYGTYDRLTDDGLTKWHPA
FLSLGKTLDECAKNYRKFCHKYKPRPKPEKRSRWGSRFLPKVKKKKKNKVSPGQMRLPWADWEPPSNLVAEVARQFVLAN
CYDPEAAMKFFDDQ

Sequences:

>Translated_254_residues
MPRKPRQLLPQYSDHVTCRCNNREFRLTRLQCRQVFLFALKKALDKFGFKLYALCIMSNHIHYLLEPSIREDLPKIMHWL
NWYTAMCFNQMLNRTGHFWEKRYHSTGFENTDKKRALNTLRYIHANPKAANMQSGFFYDFSNYGTYDRLTDDGLTKWHPA
FLSLGKTLDECAKNYRKFCHKYKPRPKPEKRSRWGSRFLPKVKKKKKNKVSPGQMRLPWADWEPPSNLVAEVARQFVLAN
CYDPEAAMKFFDDQ
>Mature_253_residues
PRKPRQLLPQYSDHVTCRCNNREFRLTRLQCRQVFLFALKKALDKFGFKLYALCIMSNHIHYLLEPSIREDLPKIMHWLN
WYTAMCFNQMLNRTGHFWEKRYHSTGFENTDKKRALNTLRYIHANPKAANMQSGFFYDFSNYGTYDRLTDDGLTKWHPAF
LSLGKTLDECAKNYRKFCHKYKPRPKPEKRSRWGSRFLPKVKKKKKNKVSPGQMRLPWADWEPPSNLVAEVARQFVLANC
YDPEAAMKFFDDQ

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30362; Mature: 30231

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHCCC
>Mature Secondary Structure 
PRKPRQLLPQYSDHVTCRCNNREFRLTRLQCRQVFLFALKKALDKFGFKLYALCIMSNH
CCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IHYLLEPSIREDLPKIMHWLNWYTAMCFNQMLNRTGHFWEKRYHSTGFENTDKKRALNTL
HHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RYIHANPKAANMQSGFFYDFSNYGTYDRLTDDGLTKWHPAFLSLGKTLDECAKNYRKFCH
HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KYKPRPKPEKRSRWGSRFLPKVKKKKKNKVSPGQMRLPWADWEPPSNLVAEVARQFVLAN
HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC
CYDPEAAMKFFDDQ
CCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA