Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474080

Identifier: 113474080

GI number: 113474080

Start: 262379

End: 262978

Strand: Reverse

Name: 113474080

Synonym: Tery_0176

Alternate gene names: NA

Gene position: 262978-262379 (Counterclockwise)

Preceding gene: 113474083

Following gene: 113474076

Centisome position: 3.39

GC content: 37.0

Gene sequence:

>600_bases
ATGATAAGAAACAAAAAAATTACAGGAATAGCAGCAGTAGGCCTAATAATTTACATAATTGGATTATTATTAGACGCCAT
AGGTTTAAGTATTGATATTGTGCAAGGTAGACCGACTTTGTTAGTAAAAAAAACCAACCGTTTTTATTGTGAGCTACTAA
CAGACACAACACAAGGCAAAAAAGTTTGGACAGTAACATACGACGATGATCAAAGCAAAAAACCCTGGTTAGGTATGGTG
ATACCCATGGGAGGAGGTTGGTCTCCCGCTAAACGATGTGAAGAAATACAAAGACGACTAGAAAATTTTCGCGAAGATGG
CATTCTATCCTTAGACTATCGCAAAGATCCTAACACTCCCAAACAAGAAGTCATTTGTGTCAACACCAAATTAAGTAGCA
ACTGCCCATTATTGTTAACTTTAGACGTAGGAGTAGATGGTTATCAAGCCTTGAGAAAAATGACCGATGCCCTACATCTC
GGTACCATTGTTCATCAAGTAACTAAAGGAAAACAGGAAAACCCTAATTTTTCTAGAGAGTCATCTGTGATCTATTTGCA
GCCTTTTTTAGCAAAAGAAGATCTTTTAGCAGGAAAATAG

Upstream 100 bases:

>100_bases
TAAAATTTAACCTTTGAAACTTAACTTTTTAAAAGCAAACGTGTAATTAACTTTGCATAATTATCACAACTTATATATAG
ATATAATTTAGGATAAACCA

Downstream 100 bases:

>100_bases
TACTAGTCAAGTCAAAAACCATAAGTTGAGCTCAAGAAAAAGTCAAACTTTGAACATCCCTTTCTACTCGTTGCACAACC
TCGTAAGTAGCTAACCATTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MIRNKKITGIAAVGLIIYIIGLLLDAIGLSIDIVQGRPTLLVKKTNRFYCELLTDTTQGKKVWTVTYDDDQSKKPWLGMV
IPMGGGWSPAKRCEEIQRRLENFREDGILSLDYRKDPNTPKQEVICVNTKLSSNCPLLLTLDVGVDGYQALRKMTDALHL
GTIVHQVTKGKQENPNFSRESSVIYLQPFLAKEDLLAGK

Sequences:

>Translated_199_residues
MIRNKKITGIAAVGLIIYIIGLLLDAIGLSIDIVQGRPTLLVKKTNRFYCELLTDTTQGKKVWTVTYDDDQSKKPWLGMV
IPMGGGWSPAKRCEEIQRRLENFREDGILSLDYRKDPNTPKQEVICVNTKLSSNCPLLLTLDVGVDGYQALRKMTDALHL
GTIVHQVTKGKQENPNFSRESSVIYLQPFLAKEDLLAGK
>Mature_199_residues
MIRNKKITGIAAVGLIIYIIGLLLDAIGLSIDIVQGRPTLLVKKTNRFYCELLTDTTQGKKVWTVTYDDDQSKKPWLGMV
IPMGGGWSPAKRCEEIQRRLENFREDGILSLDYRKDPNTPKQEVICVNTKLSSNCPLLLTLDVGVDGYQALRKMTDALHL
GTIVHQVTKGKQENPNFSRESSVIYLQPFLAKEDLLAGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22304; Mature: 22304

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRNKKITGIAAVGLIIYIIGLLLDAIGLSIDIVQGRPTLLVKKTNRFYCELLTDTTQGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCEEEEEECCCCCCC
KVWTVTYDDDQSKKPWLGMVIPMGGGWSPAKRCEEIQRRLENFREDGILSLDYRKDPNTP
EEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
KQEVICVNTKLSSNCPLLLTLDVGVDGYQALRKMTDALHLGTIVHQVTKGKQENPNFSRE
CCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SSVIYLQPFLAKEDLLAGK
CCEEEEECCCCCCHHCCCC
>Mature Secondary Structure
MIRNKKITGIAAVGLIIYIIGLLLDAIGLSIDIVQGRPTLLVKKTNRFYCELLTDTTQGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCEEEEEECCCCCCC
KVWTVTYDDDQSKKPWLGMVIPMGGGWSPAKRCEEIQRRLENFREDGILSLDYRKDPNTP
EEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
KQEVICVNTKLSSNCPLLLTLDVGVDGYQALRKMTDALHLGTIVHQVTKGKQENPNFSRE
CCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SSVIYLQPFLAKEDLLAGK
CCEEEEECCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA