| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474066
Identifier: 113474066
GI number: 113474066
Start: 241221
End: 242240
Strand: Direct
Name: 113474066
Synonym: Tery_0160
Alternate gene names: NA
Gene position: 241221-242240 (Clockwise)
Preceding gene: 113474065
Following gene: 113474071
Centisome position: 3.11
GC content: 37.65
Gene sequence:
>1020_bases ATGAATAACGAAACGAACAAACAGGTGGAAATTTTTGAAAAAAATTTCTTTGATTGGCTTCTATCGAAGCCAAATTCTAC AGAAATATCAACAGTAATAGATAGTCCAAAGTCCATAAATAATATGGAAGCAGAAGTCAAGGAAGAGTTGGACGAACTCT ATCCAGATGATTCCGAAGAAATTGGCTGTCTCAACTGCAACGGACGTCCACCAATGCCACTGGGAGAAGTACTAACTGTG TATAATCGTTTCGAGTCATTGTTACAAAAACGGATGAAAACTGAGATTGAATCTAAACCACCACTGTTTCCTTGGGAAGA AGTGGGATACGATACTGACTATCCAGACGTTGAAGCTAAAGATTTAGTTTTCCCAATTCCTCCTTGGGCATCACAAATGA AAAATATCAAGTGGAGAAACTTATCTATACCTTTAACATATAGTGTATTTACTCGACTTTTGCAGTCTTGCCAAGAGATT GTGCAATCCAATTTACTACCTGGTAGTAGATTGGTTAAAGTTGTAGATAATTTGTTCCCTGGCCAATCTCAGTCCCTAAA TCATTTAGCCAGCTTAGTCTTAGTGGGTCAAACCCGTGATGGAGAGTTGCCTTCCCTGGAAGTTATAACTTACAATAGTG CAACTCCAAGACAACAAATGTTGTTGTCTTTACTTGCTGCTAAAGAGATTCTATCATCTTTAACTTTGATCTGTTATTTA AACGGGTCAGTGGTAAGAAGACAGTGGGAAACTGCTGTAGGTTTGATTAATATTGAGGCTGAATATTATATTGCTGAAGA TAAGTCTTCTGCATCTTTGAGATGTAAAGGGGAATTACCAGAAGCAGCAAGTCTAAAACTGCAAGGTGGAGAAGCTCAAA CAACTGCTCAATGTTCTGAGGCTGGTACTCTATTGGTAGAATTGTTTGATCCAGAACCTGAGCAAAAATATGAGCTAACT GTTAAGTTTTCAAATTGGGAAGAACCTTTAAAATTTGCTGTTTGTCTTCAAGACCTTTAA
Upstream 100 bases:
>100_bases GGTCGTAAAATCAACCAGGTTAAGAAAAAGTGGTATAAATTACTCGAACTTGCCTGGGAATTACGAAATCGTTCAGGTTC CGGAGCAGGGGCATCAAGTG
Downstream 100 bases:
>100_bases TGACTAAATTTGTAGCTACAAAATTCTAGTGACAAATGGCTAAGAATAATAATATACTGTGCCTATGCTGGTAAAATCTT AAATAGATGCTTCTAAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MNNETNKQVEIFEKNFFDWLLSKPNSTEISTVIDSPKSINNMEAEVKEELDELYPDDSEEIGCLNCNGRPPMPLGEVLTV YNRFESLLQKRMKTEIESKPPLFPWEEVGYDTDYPDVEAKDLVFPIPPWASQMKNIKWRNLSIPLTYSVFTRLLQSCQEI VQSNLLPGSRLVKVVDNLFPGQSQSLNHLASLVLVGQTRDGELPSLEVITYNSATPRQQMLLSLLAAKEILSSLTLICYL NGSVVRRQWETAVGLINIEAEYYIAEDKSSASLRCKGELPEAASLKLQGGEAQTTAQCSEAGTLLVELFDPEPEQKYELT VKFSNWEEPLKFAVCLQDL
Sequences:
>Translated_339_residues MNNETNKQVEIFEKNFFDWLLSKPNSTEISTVIDSPKSINNMEAEVKEELDELYPDDSEEIGCLNCNGRPPMPLGEVLTV YNRFESLLQKRMKTEIESKPPLFPWEEVGYDTDYPDVEAKDLVFPIPPWASQMKNIKWRNLSIPLTYSVFTRLLQSCQEI VQSNLLPGSRLVKVVDNLFPGQSQSLNHLASLVLVGQTRDGELPSLEVITYNSATPRQQMLLSLLAAKEILSSLTLICYL NGSVVRRQWETAVGLINIEAEYYIAEDKSSASLRCKGELPEAASLKLQGGEAQTTAQCSEAGTLLVELFDPEPEQKYELT VKFSNWEEPLKFAVCLQDL >Mature_339_residues MNNETNKQVEIFEKNFFDWLLSKPNSTEISTVIDSPKSINNMEAEVKEELDELYPDDSEEIGCLNCNGRPPMPLGEVLTV YNRFESLLQKRMKTEIESKPPLFPWEEVGYDTDYPDVEAKDLVFPIPPWASQMKNIKWRNLSIPLTYSVFTRLLQSCQEI VQSNLLPGSRLVKVVDNLFPGQSQSLNHLASLVLVGQTRDGELPSLEVITYNSATPRQQMLLSLLAAKEILSSLTLICYL NGSVVRRQWETAVGLINIEAEYYIAEDKSSASLRCKGELPEAASLKLQGGEAQTTAQCSEAGTLLVELFDPEPEQKYELT VKFSNWEEPLKFAVCLQDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38263; Mature: 38263
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNETNKQVEIFEKNFFDWLLSKPNSTEISTVIDSPKSINNMEAEVKEELDELYPDDSEE CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC IGCLNCNGRPPMPLGEVLTVYNRFESLLQKRMKTEIESKPPLFPWEEVGYDTDYPDVEAK EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCC DLVFPIPPWASQMKNIKWRNLSIPLTYSVFTRLLQSCQEIVQSNLLPGSRLVKVVDNLFP CEEEECCCHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC GQSQSLNHLASLVLVGQTRDGELPSLEVITYNSATPRQQMLLSLLAAKEILSSLTLICYL CCCHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEEEE NGSVVRRQWETAVGLINIEAEYYIAEDKSSASLRCKGELPEAASLKLQGGEAQTTAQCSE CCHHHHHHHHHHEEEEEEEEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHC AGTLLVELFDPEPEQKYELTVKFSNWEEPLKFAVCLQDL CCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCC >Mature Secondary Structure MNNETNKQVEIFEKNFFDWLLSKPNSTEISTVIDSPKSINNMEAEVKEELDELYPDDSEE CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC IGCLNCNGRPPMPLGEVLTVYNRFESLLQKRMKTEIESKPPLFPWEEVGYDTDYPDVEAK EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCC DLVFPIPPWASQMKNIKWRNLSIPLTYSVFTRLLQSCQEIVQSNLLPGSRLVKVVDNLFP CEEEECCCHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC GQSQSLNHLASLVLVGQTRDGELPSLEVITYNSATPRQQMLLSLLAAKEILSSLTLICYL CCCHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEEEE NGSVVRRQWETAVGLINIEAEYYIAEDKSSASLRCKGELPEAASLKLQGGEAQTTAQCSE CCHHHHHHHHHHEEEEEEEEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHC AGTLLVELFDPEPEQKYELTVKFSNWEEPLKFAVCLQDL CCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA