| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113473958
Identifier: 113473958
GI number: 113473958
Start: 36830
End: 38158
Strand: Direct
Name: 113473958
Synonym: Tery_0022
Alternate gene names: NA
Gene position: 36830-38158 (Clockwise)
Preceding gene: 113473957
Following gene: 113473959
Centisome position: 0.48
GC content: 28.37
Gene sequence:
>1329_bases TTGCCTCATACTAATCAAACTGAAAGAAAGTACTATTCCCATTATTCTGATGATCAAATTAGGCAAATAGTGGTAGAAAA ATATAAAACTTGTCTAGAAAAGTTTGGGTATTTATTTGAATTAGAAATTAAATATAAATTTGATAAAAATTATCAGATAA AAATATCTATTCCCATTTATAAAAAGTTTATGGTTCCAGTGATTAATAATTTCATTTCAAAAGCTAATAAATTAAAAAAA GAGGAGAAGCTAGATGAAGCGATCGCTCTTTACAAACAAGCTATAGAATTAAATCCCGGTTTTCCTTGGTATTACTATGA ACTAGGAGAAACTTTAACAGAAAAAGGAGATTTAGATGAAGCAATAGCTCAGTTTTTTCAAGCTACTAAAATTAATCCTA ACTCTGCCTGGTTTTGTTATGAACTGGCAAAAGCTTTACAAAAAAAAGGTGAGTTAAATCAGGCAATTAATTATTATAGA CAAGCTATTGAAAGTAACCCAGACTTTTATGGATTTTACAATAGTCTAGGTTGTTGCTTTTTCCAGAATAAAAATTATCA TCAAGCTATAATTAATTTTTTAATCGCACTGGAATTAAACTCCAGTTCAGTAATTAGCTACGAATATTTATATCAAGTAT ACTTACAACTTGGTTTGACTAAAAAATGTATTGATAATTTGTTTGGTAGATTTAAACAACCTAGTCAAAAACCTACTTTA ACTATTCGCATAAAAGAAAAATCTGTCAATTCAAAACAGGAATTATCGAAAACAAAAATATTTGGAATTGGTTTAGGAAA AACAGGTACCACAACTTTGGGAGCTTGCTTAAATAATCTTGGATATAAACACTATGGTTGGTATACTTTGACTAATCACA AACTGCTTTACCAAATTAAATTAGATAATTTTGATGATGTTCATAGAGTAGTCAATCAATATGATTGTTTTGAAGATTAT CCGTGGCCTTTGATTTACAAATGGCTCGATCAAAAATACCCTAATAGTAAATTTATATTAACCATAAGGAAATGTTCTCA AACTTGGTTTAAAAGTTGTTTAAATCATTATTTTCGACTACAAGATAGAGCAGCTTATCTCTATGATTTAATCTATGGTT TAGGTCATCCACAGAATTGTTCAGATGAGTATATAAATTTTTACGAAAGTCATAATCAACAAGTTATTGATTACTTTCAA AGTAAACCGGATAAATTACTGATAATTTGTTGGGAAAAAGGAGATAGTTGGGATAAATTATGTGGTTTTCTCGGAAAAAC AGTTCCTGAAATTCTTTTGCCTCATTTGATGAAAAGTCAAACTAATTAA
Upstream 100 bases:
>100_bases TGGGTAAATATTAGTAGATTATACCTATATATTTGATAAATTAAAGTTAGATTTTTAGAAAGTTATATGAAATCTTGATC TAAATCCTTGGCTATTTGAA
Downstream 100 bases:
>100_bases TCAAGGATATATTTTTAATAAAATTGCTACAGGAGATTTAATGATGCAGGGAGATTAACTCAAATATGAGGGAAAGTTAG ATTCGCGTTTCGCTGCGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Sulfotransferase; Peptidase; Glycosyl Transferase Family Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat Family; Sel1 Repeat Family; TPR Domain Containing Protein; TPR Domain Protein; Peptidase S1 And S6 Chymotrypsin/Hap; Protein With TPR Motifs
Number of amino acids: Translated: 442; Mature: 441
Protein sequence:
>442_residues MPHTNQTERKYYSHYSDDQIRQIVVEKYKTCLEKFGYLFELEIKYKFDKNYQIKISIPIYKKFMVPVINNFISKANKLKK EEKLDEAIALYKQAIELNPGFPWYYYELGETLTEKGDLDEAIAQFFQATKINPNSAWFCYELAKALQKKGELNQAINYYR QAIESNPDFYGFYNSLGCCFFQNKNYHQAIINFLIALELNSSSVISYEYLYQVYLQLGLTKKCIDNLFGRFKQPSQKPTL TIRIKEKSVNSKQELSKTKIFGIGLGKTGTTTLGACLNNLGYKHYGWYTLTNHKLLYQIKLDNFDDVHRVVNQYDCFEDY PWPLIYKWLDQKYPNSKFILTIRKCSQTWFKSCLNHYFRLQDRAAYLYDLIYGLGHPQNCSDEYINFYESHNQQVIDYFQ SKPDKLLIICWEKGDSWDKLCGFLGKTVPEILLPHLMKSQTN
Sequences:
>Translated_442_residues MPHTNQTERKYYSHYSDDQIRQIVVEKYKTCLEKFGYLFELEIKYKFDKNYQIKISIPIYKKFMVPVINNFISKANKLKK EEKLDEAIALYKQAIELNPGFPWYYYELGETLTEKGDLDEAIAQFFQATKINPNSAWFCYELAKALQKKGELNQAINYYR QAIESNPDFYGFYNSLGCCFFQNKNYHQAIINFLIALELNSSSVISYEYLYQVYLQLGLTKKCIDNLFGRFKQPSQKPTL TIRIKEKSVNSKQELSKTKIFGIGLGKTGTTTLGACLNNLGYKHYGWYTLTNHKLLYQIKLDNFDDVHRVVNQYDCFEDY PWPLIYKWLDQKYPNSKFILTIRKCSQTWFKSCLNHYFRLQDRAAYLYDLIYGLGHPQNCSDEYINFYESHNQQVIDYFQ SKPDKLLIICWEKGDSWDKLCGFLGKTVPEILLPHLMKSQTN >Mature_441_residues PHTNQTERKYYSHYSDDQIRQIVVEKYKTCLEKFGYLFELEIKYKFDKNYQIKISIPIYKKFMVPVINNFISKANKLKKE EKLDEAIALYKQAIELNPGFPWYYYELGETLTEKGDLDEAIAQFFQATKINPNSAWFCYELAKALQKKGELNQAINYYRQ AIESNPDFYGFYNSLGCCFFQNKNYHQAIINFLIALELNSSSVISYEYLYQVYLQLGLTKKCIDNLFGRFKQPSQKPTLT IRIKEKSVNSKQELSKTKIFGIGLGKTGTTTLGACLNNLGYKHYGWYTLTNHKLLYQIKLDNFDDVHRVVNQYDCFEDYP WPLIYKWLDQKYPNSKFILTIRKCSQTWFKSCLNHYFRLQDRAAYLYDLIYGLGHPQNCSDEYINFYESHNQQVIDYFQS KPDKLLIICWEKGDSWDKLCGFLGKTVPEILLPHLMKSQTN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32307148, Length=158, Percent_Identity=27.8481012658228, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI32307150, Length=158, Percent_Identity=27.8481012658228, Blast_Score=69, Evalue=8e-12, Organism=Caenorhabditis elegans, GI115532692, Length=151, Percent_Identity=31.7880794701987, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115532690, Length=135, Percent_Identity=32.5925925925926, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI17647755, Length=158, Percent_Identity=27.2151898734177, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24585827, Length=158, Percent_Identity=27.2151898734177, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24585829, Length=158, Percent_Identity=27.2151898734177, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52283; Mature: 52152
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHTNQTERKYYSHYSDDQIRQIVVEKYKTCLEKFGYLFELEIKYKFDKNYQIKISIPIY CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCHH KKFMVPVINNFISKANKLKKEEKLDEAIALYKQAIELNPGFPWYYYELGETLTEKGDLDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH AIAQFFQATKINPNSAWFCYELAKALQKKGELNQAINYYRQAIESNPDFYGFYNSLGCCF HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHCCCEEE FQNKNYHQAIINFLIALELNSSSVISYEYLYQVYLQLGLTKKCIDNLFGRFKQPSQKPTL ECCCCHHHHHHHHHHEEEECCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEE TIRIKEKSVNSKQELSKTKIFGIGLGKTGTTTLGACLNNLGYKHYGWYTLTNHKLLYQIK EEEEECCCCCCHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCEECEEEEECCEEEEEEE LDNFDDVHRVVNQYDCFEDYPWPLIYKWLDQKYPNSKFILTIRKCSQTWFKSCLNHYFRL CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH QDRAAYLYDLIYGLGHPQNCSDEYINFYESHNQQVIDYFQSKPDKLLIICWEKGDSWDKL HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCHHHH CGFLGKTVPEILLPHLMKSQTN HHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PHTNQTERKYYSHYSDDQIRQIVVEKYKTCLEKFGYLFELEIKYKFDKNYQIKISIPIY CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCHH KKFMVPVINNFISKANKLKKEEKLDEAIALYKQAIELNPGFPWYYYELGETLTEKGDLDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH AIAQFFQATKINPNSAWFCYELAKALQKKGELNQAINYYRQAIESNPDFYGFYNSLGCCF HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHCCCEEE FQNKNYHQAIINFLIALELNSSSVISYEYLYQVYLQLGLTKKCIDNLFGRFKQPSQKPTL ECCCCHHHHHHHHHHEEEECCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEE TIRIKEKSVNSKQELSKTKIFGIGLGKTGTTTLGACLNNLGYKHYGWYTLTNHKLLYQIK EEEEECCCCCCHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCEECEEEEECCEEEEEEE LDNFDDVHRVVNQYDCFEDYPWPLIYKWLDQKYPNSKFILTIRKCSQTWFKSCLNHYFRL CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH QDRAAYLYDLIYGLGHPQNCSDEYINFYESHNQQVIDYFQSKPDKLLIICWEKGDSWDKL HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCHHHH CGFLGKTVPEILLPHLMKSQTN HHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA