| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113473959
Identifier: 113473959
GI number: 113473959
Start: 39907
End: 40488
Strand: Direct
Name: 113473959
Synonym: Tery_0023
Alternate gene names: NA
Gene position: 39907-40488 (Clockwise)
Preceding gene: 113473958
Following gene: 113473960
Centisome position: 0.51
GC content: 29.73
Gene sequence:
>582_bases ATGACTACAGGAAATTTAATCATACAAGGAAATAAACTGAAACGTGAGGGAAAGTTAGATGAAGCGATCGCTCTCTATAC ACAAGCTATAAATTTAAAGCCAGACTTTGCTTTTACTTATTATGAATTAGGGGATGCTCTGGAAAAACAAGGTAATTTTG CTCAAGCCATTATTGAATATGAAAAAGCTATTGAACTGAATCCTAATATAGATTTTTTTCATCAGAGTCTGGAAACAATT AAAAGTAGGAAACTTGAGCAAAATATTGATTTGACTTCCAATCAAATTAACTCAGATTTTTTGGTTGTGGGAATTTCCAT GATTAAAAACGAGGAAGACGTTTTAGAAACTTTTATTCGTCATAATTTGAACTATCTTGACTTTTTAGTATTAGCCGATA ATGGTTCTACAGATAATAGTAGAAAAATCATTAACAAACTTATTCAAGAAGGTTTCAACCTTTGTGTAATTGATGACTAT AAAATGGCTCATAATCAAAATAATAAAATGACAAATTTCTACAGAAGAGTAGCTACATCATTATTTCCAGAATTTATTGT TCCAATGATGCAGATGAATTAA
Upstream 100 bases:
>100_bases GATAAATTATGTAGTTTTCTCGGAAAAACAGTTCCTGAAATTCCTTTGCCTCATCTGATGAAAAGTCAAACTAATTAATC AAGGAAATATTTTTAATAAA
Downstream 100 bases:
>100_bases TTCAGTCACCATCAAAAGAATCATTTATTAATTCACTTTCAGTCATTCCTAAAAATGGGATAGGTATTTATCCTTGGAAA ACCTATATTCCTGAACCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase S1 And S6 Chymotrypsin/Hap
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MTTGNLIIQGNKLKREGKLDEAIALYTQAINLKPDFAFTYYELGDALEKQGNFAQAIIEYEKAIELNPNIDFFHQSLETI KSRKLEQNIDLTSNQINSDFLVVGISMIKNEEDVLETFIRHNLNYLDFLVLADNGSTDNSRKIINKLIQEGFNLCVIDDY KMAHNQNNKMTNFYRRVATSLFPEFIVPMMQMN
Sequences:
>Translated_193_residues MTTGNLIIQGNKLKREGKLDEAIALYTQAINLKPDFAFTYYELGDALEKQGNFAQAIIEYEKAIELNPNIDFFHQSLETI KSRKLEQNIDLTSNQINSDFLVVGISMIKNEEDVLETFIRHNLNYLDFLVLADNGSTDNSRKIINKLIQEGFNLCVIDDY KMAHNQNNKMTNFYRRVATSLFPEFIVPMMQMN >Mature_192_residues TTGNLIIQGNKLKREGKLDEAIALYTQAINLKPDFAFTYYELGDALEKQGNFAQAIIEYEKAIELNPNIDFFHQSLETIK SRKLEQNIDLTSNQINSDFLVVGISMIKNEEDVLETFIRHNLNYLDFLVLADNGSTDNSRKIINKLIQEGFNLCVIDDYK MAHNQNNKMTNFYRRVATSLFPEFIVPMMQMN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22271; Mature: 22140
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGNLIIQGNKLKREGKLDEAIALYTQAINLKPDFAFTYYELGDALEKQGNFAQAIIEY CCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCHHHHHHHH EKAIELNPNIDFFHQSLETIKSRKLEQNIDLTSNQINSDFLVVGISMIKNEEDVLETFIR HHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHH HNLNYLDFLVLADNGSTDNSRKIINKLIQEGFNLCVIDDYKMAHNQNNKMTNFYRRVATS CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHCCCCHHHHHHHHHHHH LFPEFIVPMMQMN HHHHHHHHHHCCC >Mature Secondary Structure TTGNLIIQGNKLKREGKLDEAIALYTQAINLKPDFAFTYYELGDALEKQGNFAQAIIEY CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCHHHHHHHH EKAIELNPNIDFFHQSLETIKSRKLEQNIDLTSNQINSDFLVVGISMIKNEEDVLETFIR HHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHH HNLNYLDFLVLADNGSTDNSRKIINKLIQEGFNLCVIDDYKMAHNQNNKMTNFYRRVATS CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHCCCCHHHHHHHHHHHH LFPEFIVPMMQMN HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA