Click here to switch to the map view.

The map label for this gene is alkB1

Identifier: 110835568

GI number: 110835568

Start: 3063242

End: 3064456

Strand: Direct

Name: alkB1

Synonym: ABO_2707

Alternate gene names: 110835568

Gene position: 3063242-3064456 (Clockwise)

Preceding gene: 110835564

Following gene: 110835569

Centisome position: 98.18

GC content: 47.49

Gene sequence:

>1215_bases
ATGTCAGAGAACATTTTAACCGAGCCCCCACGAAGTGATGCTGATAATGAGGGTTATGTGGACCGAAAGCGCCACTTGTG
GATTCTTTCTGTACTGTGGCCAGCAACACCAATAATTGGCCTATATCTCGTATCCCAAACAGGGTGGAGTATATGGTACG
GATTAGTATTAATCCTATGGTACGGCCTAGTCCCTTTGATCGACACCATGCTTGGCGAGGATTATTCCAACCCTCCTGAA
TCCGTTGTTCCTAAGCTTGAACAAGACCGTTACTACAAAGTTTTAACGTACTTAACCGTTCCTATTCATTATGCAGCGTT
GATTATAAGTGCCTGGTGGGTATCTACCCAACCAATAGGGGTATTCGAGTTTTTAGCTCTCGCCCTTTCTTTGGGCATTG
TTAATGGACTGGCACTCAACACAGGCCATGAACTCGGGCATAAAAAAGAAACCTTTGACCGCTGGATGGCCAAGCTTGTA
CTGGCCGTGGTCGGATATGGTCACTTCTTCATTGAACACAATAAAGGGCATCATCGTGACGTAGCAACACCGATGGACCC
GGCTACATCCCGCATGGGCGAATCTATTTATACGTTTTCACTGCGTGAAATTCCTGGTGCCTTTAAACGGGCATGGGGCT
TGGAAGAGCAGCGCCTCAGCCGTTGCGGCAAAAGCGTATGGAGCCTAGATAATGAAGTCTTACAGCCTATGATTTTGACG
GTAGTGCTTTATGCCGCATTGCTGGCATTTTTCGGTCCTTTAATGCTCATCTTTTTGCCCATTCAAATGGCCTTCGGCTG
GTGGCAGCTGACCAGTGCCAATTATATTGAGCACTACGGACTGCTGCGTGAAAAGCTGCCGAACGGGCGTTACGAGCATC
AAAAACCCCATCATTCATGGAATTCAAACCATGTAATGTCGAACCTCATCCTGTTTCATCTGCAACGTCATTCAGATCAC
CATGCGCATCCTACAAGATCTTATCAATCACTTAGGGACTTCAGCGACCTTCCCACCCTGCCTACGGGCTACCCTGGGAT
GTTCTTCGTCGCATTCTTTCCCTCCTGGTTTCGTTCACTAATGGATGATCGGGTGATGGAGTGGGCGCACGGAGACATTA
ATAAGATCCAGATTCAGCCGGGAATGCGTGAATTCTATGAGCAAAAATTTGGAGTAAAGGGTTCGGAGTCACCCGATACA
ACCGTTGCCAAATAA

Upstream 100 bases:

>100_bases
CCTACCACTGCCTACAACCTACAACTCGTCCGCTCACCAACATTACGCGGTGTCGCACAGCCTGTAGAAACAATCAATAT
GATAAAACAAGGTGATCCTA

Downstream 100 bases:

>100_bases
TCGCCAACAGAAATCCATCTATTAAAGCTCGTGCTTTCACACTTTGAGGAACAGCGCCCGGCGTGTACGTCGGGCGCCAT
TAACTAAAGACAATAATATT

Product: alkane 1-monooxygenase

Products: NA

Alternate protein names: Alkane hydroxylase; AHs; Terminal alkane hydroxylase

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MSENILTEPPRSDADNEGYVDRKRHLWILSVLWPATPIIGLYLVSQTGWSIWYGLVLILWYGLVPLIDTMLGEDYSNPPE
SVVPKLEQDRYYKVLTYLTVPIHYAALIISAWWVSTQPIGVFEFLALALSLGIVNGLALNTGHELGHKKETFDRWMAKLV
LAVVGYGHFFIEHNKGHHRDVATPMDPATSRMGESIYTFSLREIPGAFKRAWGLEEQRLSRCGKSVWSLDNEVLQPMILT
VVLYAALLAFFGPLMLIFLPIQMAFGWWQLTSANYIEHYGLLREKLPNGRYEHQKPHHSWNSNHVMSNLILFHLQRHSDH
HAHPTRSYQSLRDFSDLPTLPTGYPGMFFVAFFPSWFRSLMDDRVMEWAHGDINKIQIQPGMREFYEQKFGVKGSESPDT
TVAK

Sequences:

>Translated_404_residues
MSENILTEPPRSDADNEGYVDRKRHLWILSVLWPATPIIGLYLVSQTGWSIWYGLVLILWYGLVPLIDTMLGEDYSNPPE
SVVPKLEQDRYYKVLTYLTVPIHYAALIISAWWVSTQPIGVFEFLALALSLGIVNGLALNTGHELGHKKETFDRWMAKLV
LAVVGYGHFFIEHNKGHHRDVATPMDPATSRMGESIYTFSLREIPGAFKRAWGLEEQRLSRCGKSVWSLDNEVLQPMILT
VVLYAALLAFFGPLMLIFLPIQMAFGWWQLTSANYIEHYGLLREKLPNGRYEHQKPHHSWNSNHVMSNLILFHLQRHSDH
HAHPTRSYQSLRDFSDLPTLPTGYPGMFFVAFFPSWFRSLMDDRVMEWAHGDINKIQIQPGMREFYEQKFGVKGSESPDT
TVAK
>Mature_403_residues
SENILTEPPRSDADNEGYVDRKRHLWILSVLWPATPIIGLYLVSQTGWSIWYGLVLILWYGLVPLIDTMLGEDYSNPPES
VVPKLEQDRYYKVLTYLTVPIHYAALIISAWWVSTQPIGVFEFLALALSLGIVNGLALNTGHELGHKKETFDRWMAKLVL
AVVGYGHFFIEHNKGHHRDVATPMDPATSRMGESIYTFSLREIPGAFKRAWGLEEQRLSRCGKSVWSLDNEVLQPMILTV
VLYAALLAFFGPLMLIFLPIQMAFGWWQLTSANYIEHYGLLREKLPNGRYEHQKPHHSWNSNHVMSNLILFHLQRHSDHH
AHPTRSYQSLRDFSDLPTLPTGYPGMFFVAFFPSWFRSLMDDRVMEWAHGDINKIQIQPGMREFYEQKFGVKGSESPDTT
VAK

Specific function: Catalyzes the hydroxylation of n-alkanes and fatty acids in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases C5-C12 hydrocarbones

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family. AlkB subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALKB1_ALCBS (Q0VKZ3)

Other databases:

- EMBL:   AB110225
- EMBL:   AM286690
- RefSeq:   YP_694427.1
- STRING:   Q0VKZ3
- GeneID:   4213396
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2707
- NMPDR:   fig|393595.12.peg.2717
- eggNOG:   NOG11338
- HOGENOM:   HBG289367
- OMA:   MGESIYK
- ProtClustDB:   CLSK956608
- BioCyc:   ABOR393595:ABO_2707-MONOMER
- InterPro:   IPR005804

Pfam domain/function: PF00487 FA_desaturase

EC number: =1.14.15.3

Molecular weight: Translated: 46475; Mature: 46344

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x14c8dc94)-; HASH(0x1522e03c)-; HASH(0x140caf0c)-; HASH(0x14e5cdd8)-; HASH(0x10f66d68)-; HASH(0x149a0470)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENILTEPPRSDADNEGYVDRKRHLWILSVLWPATPIIGLYLVSQTGWSIWYGLVLILW
CCCCCCCCCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YGLVPLIDTMLGEDYSNPPESVVPKLEQDRYYKVLTYLTVPIHYAALIISAWWVSTQPIG
HHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
VFEFLALALSLGIVNGLALNTGHELGHKKETFDRWMAKLVLAVVGYGHFFIEHNKGHHRD
HHHHHHHHHHHHHHHHHEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCC
VATPMDPATSRMGESIYTFSLREIPGAFKRAWGLEEQRLSRCGKSVWSLDNEVLQPMILT
CCCCCCHHHHHHCCHHEEEEHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VVLYAALLAFFGPLMLIFLPIQMAFGWWQLTSANYIEHYGLLREKLPNGRYEHQKPHHSW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
NSNHVMSNLILFHLQRHSDHHAHPTRSYQSLRDFSDLPTLPTGYPGMFFVAFFPSWFRSL
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
MDDRVMEWAHGDINKIQIQPGMREFYEQKFGVKGSESPDTTVAK
HHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCH
>Mature Secondary Structure 
SENILTEPPRSDADNEGYVDRKRHLWILSVLWPATPIIGLYLVSQTGWSIWYGLVLILW
CCCCCCCCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YGLVPLIDTMLGEDYSNPPESVVPKLEQDRYYKVLTYLTVPIHYAALIISAWWVSTQPIG
HHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
VFEFLALALSLGIVNGLALNTGHELGHKKETFDRWMAKLVLAVVGYGHFFIEHNKGHHRD
HHHHHHHHHHHHHHHHHEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCC
VATPMDPATSRMGESIYTFSLREIPGAFKRAWGLEEQRLSRCGKSVWSLDNEVLQPMILT
CCCCCCHHHHHHCCHHEEEEHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VVLYAALLAFFGPLMLIFLPIQMAFGWWQLTSANYIEHYGLLREKLPNGRYEHQKPHHSW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
NSNHVMSNLILFHLQRHSDHHAHPTRSYQSLRDFSDLPTLPTGYPGMFFVAFFPSWFRSL
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
MDDRVMEWAHGDINKIQIQPGMREFYEQKFGVKGSESPDTTVAK
HHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA