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The map label for this gene is ybiO [H]

Identifier: 110835555

GI number: 110835555

Start: 3043896

End: 3046190

Strand: Reverse

Name: ybiO [H]

Synonym: ABO_2694

Alternate gene names: 110835555

Gene position: 3046190-3043896 (Counterclockwise)

Preceding gene: 110835559

Following gene: 110835553

Centisome position: 97.63

GC content: 56.91

Gene sequence:

>2295_bases
ATGAGCCATCACCCCCAGCTTTTACGGGGCCTGACAGCCTGTCTTTCTCTTATTCTTCTGCTATTTACGGCCGCTGCGCC
TGCGCAGGAGCCGGTCGCGAAAGCCAATCAATACGGTGAGCTGGCGGACCTGCTGGAGGATGACGCCAGCCGCCAGCTGT
TGATCGACCAACTGCGCGATTTACAGGAAGGGGCGGTATCAGCGCCTATCGGGGTGGAGGATGATGCGCCGGCCGCAGAG
ATCGCCGATAAGGCCCCCAGTGGGCAAACCGCAGAGCAGGTCTCACTGGCCCGGCGGATGGCATCGGTTACCGGCGGTTT
GGCGGGTGATATGGGCCGGCAGTTTGTGGCGTTAGGCGCCTTGGTTACGGGATGGTTTGGCGCCGACGCTGAGCCTGCTG
GTGCGCCAGCAGCCTCCTCATCGTTGGATATGAAAACGGCGAGCGCGGCGCTATTGAATCTGGTGATTCTGGCGGTTGTC
ACGTTTGTTGTGTTTTGGGCATTACGGGCACTGGCCAGCTCGATCTTTGCGCGTCTTAGTCACTGGGCCGGTGCTGGTCC
AGCGAAGCTGGCTATTTTACGCACCACGGCGGCGGTAGCGTTGGCAATTCTTGTGGATGGGGTTGTGGTGGTTTTGGCTT
ATCTGGCCGGTACCTTTGTGACGCCGTTATTGAGCGAACAGCTGGGGGCGGATGCCACCCGATTGGCGCTGTTTTTGAAT
GCGTTTTTATTGGTGGAACTCGCTAAAGCGGGGCTGCGAGTGTTTTTCTCCTCGCGCTATGAAGGCCTGCGGTTGTTGCC
GGTAGCGCAGCAGCAGGCTCGCTACTGCAATCGTTTTCTTGCCCGTGAGGCCGGGCTGATTGGCTATGGTTTGCTGGTGC
TAGTGCCGATGTTGAATTTCAATTTTTCTCCTGTATTGGGTAGCGCTGTTAGCACGGTGGTTATGCTGGTGGCGTTGATT
TATGCAGCCACCGTCATTTTGCGTAAACGCACGGTGCTGCGTGATGCGTTGAAGCAACGGGCGAGCGCCAGAACCGGGGT
GGTGCGTTTAATGTGGCTGGTATTGGCGCGTAGCTGGCATTGGCTGGCACTTACGTACGCCTTGCTGGTATTTGCCGTTA
CGGTACTGAACCCCGAAACCGCCTTGCCCTATGTGGCGCTAGCAACACTGGAGACGCTGGTGTTTGTGGGGCTGGGCTTG
CTGGGGTCTGTTGCATTAGGGCAATTGATCGGCAAGGAAATACAGCTTCCCGAGGGGCTGAAAGCCAGCATGCCGCATCT
GCAAGATCGGGTGAACATTTATGTTCCCACTGGGCTGAAAGTGATCCGTGCGCTGATATTGGCGTTGGTGATTGTGATGT
CGCTGGATGCTTGGGCCTTATATGACTTGGGTGCTTGGTATGCCACGACAACCGGCACCCAGGCGGTTTCGGCCCTGGTC
GATATTCTGATTATTCTGGCGTTGGCCGCGGCGGTGTGGGTTGTGTTGGCTAGCCTGGTGGAACATAAATTCTGCCCTGA
TGAAAACAGCACCCCAGCTCAGGCCGCCCGTGGTGAAACCCTACTTGGCCTGTTCCATACTACGTTGGCCATTACCATTA
TTATCATGACGGTGATGATTGTGCTTTCCGAAGTGGGTGTGGATATCGGGCCGCTGATTGCCGGTGCCGGTGTGCTCGGC
CTGGCCGTTGGCTTCGGCGCACAGAAGCTGGTTCAGGATGTGATTACTGGGGTGTTTATCCAATTGGAAAATGCCATGAA
CACGGGGGATTTCGTTGGTGTTGGTGCTCACTCCGGCACCGTGGAGCGTGTGGGTATTCGGTCGGTGGCGTTGCGTGACC
TGTATGGTACTTACCACATAGTGCCGTTTTCCTCGGTGGATGCGGTGTCTAATTACACCCGTGAATTCGGTAATCATGTG
GGTGAATATGGCATTGCTTATCGCGAGAGCATCGACGATGCCATCGTGCAGCTGGAGGCTGCGTTTGAAGCGTTGAAGGA
AGGCGAGCACAGGAAGGATATTCTGGCTCCGCTGGAAGTGGCTGGGGTGTCGGCCTTAGCGGACAGTTCGGTGAATATCC
GTGCGGTGATTAAAACCACGCCGGGCAACCAGTGGGCTGTGGGGCGTGCCTTCAATCGGCTAGTGAAGATCTACTTCGAC
AAAGCGGGCATTGAAATTCCGTTCCCGCACACCACGCTGTATTTCGGTGAAGACCGGGACGGCAGCGCCCCGGCGGCAAA
CGTTCGCCTCGCTGATGATCGGGTTGTTTCCACCCAAGTTGGCAATGGGGGGTAA

Upstream 100 bases:

>100_bases
TCTTCACATTGTCCACGCTCTGGATTGTTAGGGTGGGCGCCTGAATGACCATCGAATGAATGTATTTTGCTCGGCGTTAG
CCGGGGTAAGGAGATCAGTG

Downstream 100 bases:

>100_bases
ATCTCCGTGTTCCACAAAAACGCCGGCGATCGAGCCGGCGCTTTCTTAGGTGAAAATTTGAGGTTGTAACGTGGCATCGG
TGGAATCAAATCAAAAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 763

Protein sequence:

>764_residues
MSHHPQLLRGLTACLSLILLLFTAAAPAQEPVAKANQYGELADLLEDDASRQLLIDQLRDLQEGAVSAPIGVEDDAPAAE
IADKAPSGQTAEQVSLARRMASVTGGLAGDMGRQFVALGALVTGWFGADAEPAGAPAASSSLDMKTASAALLNLVILAVV
TFVVFWALRALASSIFARLSHWAGAGPAKLAILRTTAAVALAILVDGVVVVLAYLAGTFVTPLLSEQLGADATRLALFLN
AFLLVELAKAGLRVFFSSRYEGLRLLPVAQQQARYCNRFLAREAGLIGYGLLVLVPMLNFNFSPVLGSAVSTVVMLVALI
YAATVILRKRTVLRDALKQRASARTGVVRLMWLVLARSWHWLALTYALLVFAVTVLNPETALPYVALATLETLVFVGLGL
LGSVALGQLIGKEIQLPEGLKASMPHLQDRVNIYVPTGLKVIRALILALVIVMSLDAWALYDLGAWYATTTGTQAVSALV
DILIILALAAAVWVVLASLVEHKFCPDENSTPAQAARGETLLGLFHTTLAITIIIMTVMIVLSEVGVDIGPLIAGAGVLG
LAVGFGAQKLVQDVITGVFIQLENAMNTGDFVGVGAHSGTVERVGIRSVALRDLYGTYHIVPFSSVDAVSNYTREFGNHV
GEYGIAYRESIDDAIVQLEAAFEALKEGEHRKDILAPLEVAGVSALADSSVNIRAVIKTTPGNQWAVGRAFNRLVKIYFD
KAGIEIPFPHTTLYFGEDRDGSAPAANVRLADDRVVSTQVGNGG

Sequences:

>Translated_764_residues
MSHHPQLLRGLTACLSLILLLFTAAAPAQEPVAKANQYGELADLLEDDASRQLLIDQLRDLQEGAVSAPIGVEDDAPAAE
IADKAPSGQTAEQVSLARRMASVTGGLAGDMGRQFVALGALVTGWFGADAEPAGAPAASSSLDMKTASAALLNLVILAVV
TFVVFWALRALASSIFARLSHWAGAGPAKLAILRTTAAVALAILVDGVVVVLAYLAGTFVTPLLSEQLGADATRLALFLN
AFLLVELAKAGLRVFFSSRYEGLRLLPVAQQQARYCNRFLAREAGLIGYGLLVLVPMLNFNFSPVLGSAVSTVVMLVALI
YAATVILRKRTVLRDALKQRASARTGVVRLMWLVLARSWHWLALTYALLVFAVTVLNPETALPYVALATLETLVFVGLGL
LGSVALGQLIGKEIQLPEGLKASMPHLQDRVNIYVPTGLKVIRALILALVIVMSLDAWALYDLGAWYATTTGTQAVSALV
DILIILALAAAVWVVLASLVEHKFCPDENSTPAQAARGETLLGLFHTTLAITIIIMTVMIVLSEVGVDIGPLIAGAGVLG
LAVGFGAQKLVQDVITGVFIQLENAMNTGDFVGVGAHSGTVERVGIRSVALRDLYGTYHIVPFSSVDAVSNYTREFGNHV
GEYGIAYRESIDDAIVQLEAAFEALKEGEHRKDILAPLEVAGVSALADSSVNIRAVIKTTPGNQWAVGRAFNRLVKIYFD
KAGIEIPFPHTTLYFGEDRDGSAPAANVRLADDRVVSTQVGNGG
>Mature_763_residues
SHHPQLLRGLTACLSLILLLFTAAAPAQEPVAKANQYGELADLLEDDASRQLLIDQLRDLQEGAVSAPIGVEDDAPAAEI
ADKAPSGQTAEQVSLARRMASVTGGLAGDMGRQFVALGALVTGWFGADAEPAGAPAASSSLDMKTASAALLNLVILAVVT
FVVFWALRALASSIFARLSHWAGAGPAKLAILRTTAAVALAILVDGVVVVLAYLAGTFVTPLLSEQLGADATRLALFLNA
FLLVELAKAGLRVFFSSRYEGLRLLPVAQQQARYCNRFLAREAGLIGYGLLVLVPMLNFNFSPVLGSAVSTVVMLVALIY
AATVILRKRTVLRDALKQRASARTGVVRLMWLVLARSWHWLALTYALLVFAVTVLNPETALPYVALATLETLVFVGLGLL
GSVALGQLIGKEIQLPEGLKASMPHLQDRVNIYVPTGLKVIRALILALVIVMSLDAWALYDLGAWYATTTGTQAVSALVD
ILIILALAAAVWVVLASLVEHKFCPDENSTPAQAARGETLLGLFHTTLAITIIIMTVMIVLSEVGVDIGPLIAGAGVLGL
AVGFGAQKLVQDVITGVFIQLENAMNTGDFVGVGAHSGTVERVGIRSVALRDLYGTYHIVPFSSVDAVSNYTREFGNHVG
EYGIAYRESIDDAIVQLEAAFEALKEGEHRKDILAPLEVAGVSALADSSVNIRAVIKTTPGNQWAVGRAFNRLVKIYFDK
AGIEIPFPHTTLYFGEDRDGSAPAANVRLADDRVVSTQVGNGG

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=709, Percent_Identity=34.555712270804, Blast_Score=371, Evalue=1e-104,
Organism=Escherichia coli, GI1789291, Length=216, Percent_Identity=28.7037037037037, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 80935; Mature: 80804

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHHPQLLRGLTACLSLILLLFTAAAPAQEPVAKANQYGELADLLEDDASRQLLIDQLRD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LQEGAVSAPIGVEDDAPAAEIADKAPSGQTAEQVSLARRMASVTGGLAGDMGRQFVALGA
HHHCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LVTGWFGADAEPAGAPAASSSLDMKTASAALLNLVILAVVTFVVFWALRALASSIFARLS
HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HWAGAGPAKLAILRTTAAVALAILVDGVVVVLAYLAGTFVTPLLSEQLGADATRLALFLN
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AFLLVELAKAGLRVFFSSRYEGLRLLPVAQQQARYCNRFLAREAGLIGYGLLVLVPMLNF
HHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
NFSPVLGSAVSTVVMLVALIYAATVILRKRTVLRDALKQRASARTGVVRLMWLVLARSWH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
WLALTYALLVFAVTVLNPETALPYVALATLETLVFVGLGLLGSVALGQLIGKEIQLPEGL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
KASMPHLQDRVNIYVPTGLKVIRALILALVIVMSLDAWALYDLGAWYATTTGTQAVSALV
CCCCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHCCCCHHHHHHHHH
DILIILALAAAVWVVLASLVEHKFCPDENSTPAQAARGETLLGLFHTTLAITIIIMTVMI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VLSEVGVDIGPLIAGAGVLGLAVGFGAQKLVQDVITGVFIQLENAMNTGDFVGVGAHSGT
HHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
VERVGIRSVALRDLYGTYHIVPFSSVDAVSNYTREFGNHVGEYGIAYRESIDDAIVQLEA
HHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFEALKEGEHRKDILAPLEVAGVSALADSSVNIRAVIKTTPGNQWAVGRAFNRLVKIYFD
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
KAGIEIPFPHTTLYFGEDRDGSAPAANVRLADDRVVSTQVGNGG
CCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCEEECCCCCCC
>Mature Secondary Structure 
SHHPQLLRGLTACLSLILLLFTAAAPAQEPVAKANQYGELADLLEDDASRQLLIDQLRD
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LQEGAVSAPIGVEDDAPAAEIADKAPSGQTAEQVSLARRMASVTGGLAGDMGRQFVALGA
HHHCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LVTGWFGADAEPAGAPAASSSLDMKTASAALLNLVILAVVTFVVFWALRALASSIFARLS
HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HWAGAGPAKLAILRTTAAVALAILVDGVVVVLAYLAGTFVTPLLSEQLGADATRLALFLN
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AFLLVELAKAGLRVFFSSRYEGLRLLPVAQQQARYCNRFLAREAGLIGYGLLVLVPMLNF
HHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
NFSPVLGSAVSTVVMLVALIYAATVILRKRTVLRDALKQRASARTGVVRLMWLVLARSWH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
WLALTYALLVFAVTVLNPETALPYVALATLETLVFVGLGLLGSVALGQLIGKEIQLPEGL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
KASMPHLQDRVNIYVPTGLKVIRALILALVIVMSLDAWALYDLGAWYATTTGTQAVSALV
CCCCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHCCCCHHHHHHHHH
DILIILALAAAVWVVLASLVEHKFCPDENSTPAQAARGETLLGLFHTTLAITIIIMTVMI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VLSEVGVDIGPLIAGAGVLGLAVGFGAQKLVQDVITGVFIQLENAMNTGDFVGVGAHSGT
HHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
VERVGIRSVALRDLYGTYHIVPFSSVDAVSNYTREFGNHVGEYGIAYRESIDDAIVQLEA
HHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFEALKEGEHRKDILAPLEVAGVSALADSSVNIRAVIKTTPGNQWAVGRAFNRLVKIYFD
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
KAGIEIPFPHTTLYFGEDRDGSAPAANVRLADDRVVSTQVGNGG
CCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]