| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110835553
Identifier: 110835553
GI number: 110835553
Start: 3041816
End: 3042802
Strand: Reverse
Name: 110835553
Synonym: ABO_2692
Alternate gene names: NA
Gene position: 3042802-3041816 (Counterclockwise)
Preceding gene: 110835555
Following gene: 110835551
Centisome position: 97.52
GC content: 54.81
Gene sequence:
>987_bases ATGGCGAGTAATAAACAAGAAGTGGCGAATCGTTTACTGGATGGGCTGATTGGTTATCTATTGGCGCGCCTCTCGCCGGG GCATCTGGATTCGTTGATCGTTGATGAGCTGGATTACATTCTTGAGAAAGCGGCAAGCTACTCCTTGAATCAGTGGGTAC AGGCTGAGCAGGTGTTTGCCACGGCGCAGAAGTACGCGGTGAAGATGGATATCAGTGGTGCGATTCCCGAGCTGGTGGGC GATATGGTGGAGCAATTCTATGACCACGCTATCCAGAGCGAACGCATTGTGGAAGAAGTTATCGATGAGGCCGTGGTGAT GGCTCTGTTCGATAAGGTGCTGGAAATCCCATTGTCTCGGGAAGGGATGGCTTGGCTGGGGCGCAACCCGGTGTTGCTGG CGTTGCTGGCGGGGGGGGCCCAGCTGGGAATCAAGACGCTGTTGCATCAGGGCTTACCTAGCCCCTTTCGCGGCCAGTTG AGCAAACGATTACCGGAGCGCTGGCTGGCCAGCCTAGAGATCCGCTTGCAGGAATGGTTGCTGCGCCGTACGGAGCAATT ATTGAGTGACCCTTATTTGTACTGTGACGAGAACGTAGCTGAACTGCGTGAGCTGGTGAAGGTGGCCTGGCAGGATTTTG GGCAACGCCCGGTGGCGGACGTGAAAGAGCTGGTGAGCAGTGAGGATATTCAAGAGCTGTTCGTGATCGTGTTCGAGTAT TGGCGGGAGCTTCGCCACACAGATTACTTCAATGTCATGTTGGAATCCGGGGTGCAGGCGTTTTTTGATAAATACGGTGA TACCAGCCTGACGGGCTTGCTTGATGAATTGGGTGTGACCCGCGAGCTGATGTTGGATGATGCTCGTCGCTTCCTGCCGC CGGTGATGGCTAAGCTGCAGGAAGAAGGCTTGCTAGAGGCATGGTTGCGTCGCCATCTGGAAGGGTATTTTCAGGCGGAG GAGACGCTGGAGATGCTTAAGGGTTAG
Upstream 100 bases:
>100_bases TCGAGGTCGACATTATACATTCCTCCGCAACTGTTACATCACTGGATGATACAATTGATGTGCGTATCATCAAGAACTTT CTTCATAGGGAAGGTAAAAA
Downstream 100 bases:
>100_bases TGCGTGGATACGCGCCGCAATCAGCTTAAGGAGCCTCAGCAACGCTATTTCATGCTCAGCCTTGCCGCTGGTTCGTTGCC CTTGGCCAAGGTAACGACGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MASNKQEVANRLLDGLIGYLLARLSPGHLDSLIVDELDYILEKAASYSLNQWVQAEQVFATAQKYAVKMDISGAIPELVG DMVEQFYDHAIQSERIVEEVIDEAVVMALFDKVLEIPLSREGMAWLGRNPVLLALLAGGAQLGIKTLLHQGLPSPFRGQL SKRLPERWLASLEIRLQEWLLRRTEQLLSDPYLYCDENVAELRELVKVAWQDFGQRPVADVKELVSSEDIQELFVIVFEY WRELRHTDYFNVMLESGVQAFFDKYGDTSLTGLLDELGVTRELMLDDARRFLPPVMAKLQEEGLLEAWLRRHLEGYFQAE ETLEMLKG
Sequences:
>Translated_328_residues MASNKQEVANRLLDGLIGYLLARLSPGHLDSLIVDELDYILEKAASYSLNQWVQAEQVFATAQKYAVKMDISGAIPELVG DMVEQFYDHAIQSERIVEEVIDEAVVMALFDKVLEIPLSREGMAWLGRNPVLLALLAGGAQLGIKTLLHQGLPSPFRGQL SKRLPERWLASLEIRLQEWLLRRTEQLLSDPYLYCDENVAELRELVKVAWQDFGQRPVADVKELVSSEDIQELFVIVFEY WRELRHTDYFNVMLESGVQAFFDKYGDTSLTGLLDELGVTRELMLDDARRFLPPVMAKLQEEGLLEAWLRRHLEGYFQAE ETLEMLKG >Mature_327_residues ASNKQEVANRLLDGLIGYLLARLSPGHLDSLIVDELDYILEKAASYSLNQWVQAEQVFATAQKYAVKMDISGAIPELVGD MVEQFYDHAIQSERIVEEVIDEAVVMALFDKVLEIPLSREGMAWLGRNPVLLALLAGGAQLGIKTLLHQGLPSPFRGQLS KRLPERWLASLEIRLQEWLLRRTEQLLSDPYLYCDENVAELRELVKVAWQDFGQRPVADVKELVSSEDIQELFVIVFEYW RELRHTDYFNVMLESGVQAFFDKYGDTSLTGLLDELGVTRELMLDDARRFLPPVMAKLQEEGLLEAWLRRHLEGYFQAEE TLEMLKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37517; Mature: 37385
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASNKQEVANRLLDGLIGYLLARLSPGHLDSLIVDELDYILEKAASYSLNQWVQAEQVFA CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAQKYAVKMDISGAIPELVGDMVEQFYDHAIQSERIVEEVIDEAVVMALFDKVLEIPLSR HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EGMAWLGRNPVLLALLAGGAQLGIKTLLHQGLPSPFRGQLSKRLPERWLASLEIRLQEWL CCCHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LRRTEQLLSDPYLYCDENVAELRELVKVAWQDFGQRPVADVKELVSSEDIQELFVIVFEY HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHH WRELRHTDYFNVMLESGVQAFFDKYGDTSLTGLLDELGVTRELMLDDARRFLPPVMAKLQ HHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH EEGLLEAWLRRHLEGYFQAEETLEMLKG HCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ASNKQEVANRLLDGLIGYLLARLSPGHLDSLIVDELDYILEKAASYSLNQWVQAEQVFA CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAQKYAVKMDISGAIPELVGDMVEQFYDHAIQSERIVEEVIDEAVVMALFDKVLEIPLSR HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EGMAWLGRNPVLLALLAGGAQLGIKTLLHQGLPSPFRGQLSKRLPERWLASLEIRLQEWL CCCHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LRRTEQLLSDPYLYCDENVAELRELVKVAWQDFGQRPVADVKELVSSEDIQELFVIVFEY HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHH WRELRHTDYFNVMLESGVQAFFDKYGDTSLTGLLDELGVTRELMLDDARRFLPPVMAKLQ HHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH EEGLLEAWLRRHLEGYFQAEETLEMLKG HCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA