| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835537
Identifier: 110835537
GI number: 110835537
Start: 3022858
End: 3024042
Strand: Direct
Name: 110835537
Synonym: ABO_2676
Alternate gene names: NA
Gene position: 3022858-3024042 (Clockwise)
Preceding gene: 110835536
Following gene: 110835547
Centisome position: 96.88
GC content: 53.33
Gene sequence:
>1185_bases ATGAAAAAAAGCATCCTAGGGATTGGTGTGTTGGCGCTGGTGGCGTTCACCGTTTGGTGGCTACGGGATGCCCCTCTTGA TGACACAGCCCGACAATGGCTGGACACAACCCCCAATGATGACAACCCGGCTTATGCCTACCTGCTCGGGTTTGGTGTGC CCGCTACACAATCACCTGCGCAACAGGGGCATGAGCTGGCGCAGCGACAAAAAGTACATCCGGAGCTGGTGCTTCCCAAT GCCTACCCGAAGCTGAACAACACACCTCTGCTCTGCCATCCTATGACGGCTGCCTGCCTACTAGAGCAGCAGGAAAAAAA AGCACAAGCCAAAGCCTTGATCAGCCGCTATCAATTTCTCATAGATCGCTACCAAACCTTTCTGGAATTCTCTTATTTTT CTGACAACACGCCGCCTCGCCTGAACGCCACCTTTCCCGAGTACAACCTGTTGGTTTGCGCTTCACGGCTGCAATCACTG GCTTGGGCCAACAGCGCCGCTCCCGGCCCCGCGCTGCTCACCGAGATTCAGCAGCTGCGCCAATGGCTGGCCCAAGACCA CAGTCTGATCAGCAAAATGGTTGCCAATGCCATCCTTGCGGAAAAACTGCAGTTAGTGGCACTTCTCGTGCAGCAGAAGG CTATGCCGGCACCGGTGCTGACCCCCCTGACTTCAGCAGAAAAAAGTTTCCATTCACCAATGAAAAAAGAATTCACCCTG ATGGCGCATTTCTTTTTGGAAGAACAATACCGGGAAGGTAACCAGCAGGCGACGTGGACTGAAAAGCTACAATTCAAGGC GGGCCTGAAAAAGCATATCAGCGTAAACCGCATGCTCCCGTTATATCAGCACTATGCAAAACTCGCGGGGCAGCCCGCTG ATGTTATTCAAGCAGATAACATTCAGCCGGCCCGCGCTACAACAGGGCAAGCCATACGCAACCCCATTGGTAATGTGTTA CTGGAAACCGCCACCCCAGACTTCAAACGATACCTGTTTCGCCTGGTGCATCTAGACGCCCGCCTAGCATTGCTGAATCA GCTTGAAAATACGAAGAAAGACAGCCCCGTGAGTAACCCTTGGACCCCTGGCAAAGATGACACGCTCACCCGCCAAGACC AACAGCTATGCTTCAGGCATGCACCAGACAATGACCGCTATAGCGCCTGCTTACCTTTACTGTAA
Upstream 100 bases:
>100_bases TGGCTGGATGTTGGTGATGGTGGCCCTGAGTGCCCGCCAATATCAGCACCGGGACTTTTAGCCGCGCCCTCACTCTCTAC AACGTATAAAGAATCGCGCC
Downstream 100 bases:
>100_bases ATAGCGTCACGTAAGCGATTACCCTTTTGTGCAGAAACAGGCCAGCTTACGATACACTTTCGCCGCAGGGTTATACGCGG CATGCAGCTCTACATACTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MKKSILGIGVLALVAFTVWWLRDAPLDDTARQWLDTTPNDDNPAYAYLLGFGVPATQSPAQQGHELAQRQKVHPELVLPN AYPKLNNTPLLCHPMTAACLLEQQEKKAQAKALISRYQFLIDRYQTFLEFSYFSDNTPPRLNATFPEYNLLVCASRLQSL AWANSAAPGPALLTEIQQLRQWLAQDHSLISKMVANAILAEKLQLVALLVQQKAMPAPVLTPLTSAEKSFHSPMKKEFTL MAHFFLEEQYREGNQQATWTEKLQFKAGLKKHISVNRMLPLYQHYAKLAGQPADVIQADNIQPARATTGQAIRNPIGNVL LETATPDFKRYLFRLVHLDARLALLNQLENTKKDSPVSNPWTPGKDDTLTRQDQQLCFRHAPDNDRYSACLPLL
Sequences:
>Translated_394_residues MKKSILGIGVLALVAFTVWWLRDAPLDDTARQWLDTTPNDDNPAYAYLLGFGVPATQSPAQQGHELAQRQKVHPELVLPN AYPKLNNTPLLCHPMTAACLLEQQEKKAQAKALISRYQFLIDRYQTFLEFSYFSDNTPPRLNATFPEYNLLVCASRLQSL AWANSAAPGPALLTEIQQLRQWLAQDHSLISKMVANAILAEKLQLVALLVQQKAMPAPVLTPLTSAEKSFHSPMKKEFTL MAHFFLEEQYREGNQQATWTEKLQFKAGLKKHISVNRMLPLYQHYAKLAGQPADVIQADNIQPARATTGQAIRNPIGNVL LETATPDFKRYLFRLVHLDARLALLNQLENTKKDSPVSNPWTPGKDDTLTRQDQQLCFRHAPDNDRYSACLPLL >Mature_394_residues MKKSILGIGVLALVAFTVWWLRDAPLDDTARQWLDTTPNDDNPAYAYLLGFGVPATQSPAQQGHELAQRQKVHPELVLPN AYPKLNNTPLLCHPMTAACLLEQQEKKAQAKALISRYQFLIDRYQTFLEFSYFSDNTPPRLNATFPEYNLLVCASRLQSL AWANSAAPGPALLTEIQQLRQWLAQDHSLISKMVANAILAEKLQLVALLVQQKAMPAPVLTPLTSAEKSFHSPMKKEFTL MAHFFLEEQYREGNQQATWTEKLQFKAGLKKHISVNRMLPLYQHYAKLAGQPADVIQADNIQPARATTGQAIRNPIGNVL LETATPDFKRYLFRLVHLDARLALLNQLENTKKDSPVSNPWTPGKDDTLTRQDQQLCFRHAPDNDRYSACLPLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44446; Mature: 44446
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSILGIGVLALVAFTVWWLRDAPLDDTARQWLDTTPNDDNPAYAYLLGFGVPATQSPA CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHH QQGHELAQRQKVHPELVLPNAYPKLNNTPLLCHPMTAACLLEQQEKKAQAKALISRYQFL HHHHHHHHHHCCCCCEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH IDRYQTFLEFSYFSDNTPPRLNATFPEYNLLVCASRLQSLAWANSAAPGPALLTEIQQLR HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH QWLAQDHSLISKMVANAILAEKLQLVALLVQQKAMPAPVLTPLTSAEKSFHSPMKKEFTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHCHHHHHHHH MAHFFLEEQYREGNQQATWTEKLQFKAGLKKHISVNRMLPLYQHYAKLAGQPADVIQADN HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC IQPARATTGQAIRNPIGNVLLETATPDFKRYLFRLVHLDARLALLNQLENTKKDSPVSNP CCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC WTPGKDDTLTRQDQQLCFRHAPDNDRYSACLPLL CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MKKSILGIGVLALVAFTVWWLRDAPLDDTARQWLDTTPNDDNPAYAYLLGFGVPATQSPA CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHH QQGHELAQRQKVHPELVLPNAYPKLNNTPLLCHPMTAACLLEQQEKKAQAKALISRYQFL HHHHHHHHHHCCCCCEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH IDRYQTFLEFSYFSDNTPPRLNATFPEYNLLVCASRLQSLAWANSAAPGPALLTEIQQLR HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH QWLAQDHSLISKMVANAILAEKLQLVALLVQQKAMPAPVLTPLTSAEKSFHSPMKKEFTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHCHHHHHHHH MAHFFLEEQYREGNQQATWTEKLQFKAGLKKHISVNRMLPLYQHYAKLAGQPADVIQADN HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC IQPARATTGQAIRNPIGNVLLETATPDFKRYLFRLVHLDARLALLNQLENTKKDSPVSNP CCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC WTPGKDDTLTRQDQQLCFRHAPDNDRYSACLPLL CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA