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The map label for this gene is gtrA

Identifier: 110835547

GI number: 110835547

Start: 3032794

End: 3033354

Strand: Direct

Name: gtrA

Synonym: ABO_2686

Alternate gene names: NA

Gene position: 3032794-3033354 (Clockwise)

Preceding gene: 110835537

Following gene: 110835548

Centisome position: 97.2

GC content: 57.75

Gene sequence:

>561_bases
ATGACAAAACAGAACCTACAGAACGGCCAGCAATGGCTGACCGCTTTTACCACCACCATCGGCCGCGGCAGCGCTTGGCT
GGCGCTGCTGCTAGTACTGGGCATAGTGCTAGTCGTCGTTCTGCGCTATGGGTTCAACATCGGCAACATTGCCCTGCAAG
AATCCCTGACCTATCTGCACGGCAGCCTCTTTATGTTAGCCATCGCCTACACCTTGGCCGAAGACGAACATGTCCGGGTG
GATGTGCTCTACCAGCGTTTTAGCCCGCGCGGGCAGGCCTGGGTGAATCTGCTAGGCACCCTGTTTTTGCTGCTGCCCAT
CTGCGTAGCAATTTTCTGGTTATCTCTGGATTATGTGGCCAGTAGCTGGCGCGAGCAGGAGGGCTCCGCCAACGGCGGCC
TGCCCTATGTCTATCTGCTAAAAAGCCTGTTGCTAGTGCTGCCCGCATTGCTGAGTGTGCAGGCATTGGCTGAACTGCTA
CGCCATGGGCTAACGTTACTTGGCGCCCCCCTTCCCCCACGCACCACCGAACATGAGAAACACCCGGAGGAGGGCCTGTG
A

Upstream 100 bases:

>100_bases
ATTCAGGCTACAGACACCCTAGCCCAGCCCACACCCGGAATGCGTGCTGCCTGTGGCGTTTTCCGTATAATGCCTGTTTT
CTCGCTATCCCCTGACAATA

Downstream 100 bases:

>100_bases
TGGAATGGCTTCCCTTGTCCATGTTTGTGGCCGTATGCGTGGTATTGCTTACCGGCTACCCAGTGGCCTTTGCCCTAGGC
GGCACCGCGCTGCTGTTTGC

Product: TRAP-type transport system small permease

Products: NA

Alternate protein names: TRAP Transporter DctQ-Like Membrane Protein; C4-Dicarboxylate Transporter Family Protein DctQ Subunit; Tripartite Transporter Small Subunit; TRAP-Type Transport System Small Permease Component; Tripartite ATP-Independent Periplasmic Transporter; TRAP Mannitol/C4-Dicarboxylate Transporter; Permease Component Of C4 Dicarboxylate Transporter; Permease; TRAP Transporter DctQ Family Protein; TRAP C4-Dicarboxylate Transport System DctQ Subunit; TRAP Dicarboxylate Transporter Subunit DctQ; TRAP-Type Transporter Small Permease Component; Small Permease Of TRAP-Type Transporter; Trap-Type Transport System Small Permease Component; TRAP-Type Large Permease Component; TRAP Transporter Small Transmembrane Protein; TRAP Transporter DctQ-Like Membrane Protein Family; Triosephosphate Isomerase (TIM; TRAP Transporter Small Subunit; C4-Dicarboxylate Transporter Permease; Tripartite ATP-Independent Periplasmic Protein; Permease Protein; Tripartite ATP-Independent Periplasmic; C4-Dicarboxylate Transporter Small Subunit

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MTKQNLQNGQQWLTAFTTTIGRGSAWLALLLVLGIVLVVVLRYGFNIGNIALQESLTYLHGSLFMLAIAYTLAEDEHVRV
DVLYQRFSPRGQAWVNLLGTLFLLLPICVAIFWLSLDYVASSWREQEGSANGGLPYVYLLKSLLLVLPALLSVQALAELL
RHGLTLLGAPLPPRTTEHEKHPEEGL

Sequences:

>Translated_186_residues
MTKQNLQNGQQWLTAFTTTIGRGSAWLALLLVLGIVLVVVLRYGFNIGNIALQESLTYLHGSLFMLAIAYTLAEDEHVRV
DVLYQRFSPRGQAWVNLLGTLFLLLPICVAIFWLSLDYVASSWREQEGSANGGLPYVYLLKSLLLVLPALLSVQALAELL
RHGLTLLGAPLPPRTTEHEKHPEEGL
>Mature_185_residues
TKQNLQNGQQWLTAFTTTIGRGSAWLALLLVLGIVLVVVLRYGFNIGNIALQESLTYLHGSLFMLAIAYTLAEDEHVRVD
VLYQRFSPRGQAWVNLLGTLFLLLPICVAIFWLSLDYVASSWREQEGSANGGLPYVYLLKSLLLVLPALLSVQALAELLR
HGLTLLGAPLPPRTTEHEKHPEEGL

Specific function: Unknown

COG id: COG4665

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20636; Mature: 20504

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQNLQNGQQWLTAFTTTIGRGSAWLALLLVLGIVLVVVLRYGFNIGNIALQESLTYLH
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GSLFMLAIAYTLAEDEHVRVDVLYQRFSPRGQAWVNLLGTLFLLLPICVAIFWLSLDYVA
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSWREQEGSANGGLPYVYLLKSLLLVLPALLSVQALAELLRHGLTLLGAPLPPRTTEHEK
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
HPEEGL
CCCCCC
>Mature Secondary Structure 
TKQNLQNGQQWLTAFTTTIGRGSAWLALLLVLGIVLVVVLRYGFNIGNIALQESLTYLH
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GSLFMLAIAYTLAEDEHVRVDVLYQRFSPRGQAWVNLLGTLFLLLPICVAIFWLSLDYVA
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSWREQEGSANGGLPYVYLLKSLLLVLPALLSVQALAELLRHGLTLLGAPLPPRTTEHEK
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
HPEEGL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA