| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is ybhP [C]
Identifier: 110835509
GI number: 110835509
Start: 2994571
End: 2995473
Strand: Reverse
Name: ybhP [C]
Synonym: ABO_2648
Alternate gene names: 110835509
Gene position: 2995473-2994571 (Counterclockwise)
Preceding gene: 110835510
Following gene: 110835508
Centisome position: 96.0
GC content: 55.81
Gene sequence:
>903_bases ATGTTGCTTGATCGCGCTAGACTGGCCTACCGTGACTGGAAAGCCCGGCCCGCGGGTTTTTCCTTTGCCCGGGAAGGGGC ACGAAAGACCCGCCAGACACGGGAGGTGTTGCTGCCTCAGGATACCGTGAAGCTAATGAGCTTCAATATCCAGGCAGGCA TTGGTAGCCAGAAATTCGGTGATTACATTACCGGTAGCTGGAAGCACTTGGTGGCGCATCCACGCAGCGTGGAAACCATC GAGCAGATTGCTCAGGTGCTCAGTCACTTTGACGTGGTGGGCCTGCAGGAAGTAGATGGCGGCAGTTTACGTTCGCGTAA CATGAATCAACTGGTGCATCTCGCGTCCATGGCAGGTTTTCCTGTTTGGCACCAGCAGTTGAACCGCAACCTTGGCCGGT TCGGCCAGTTCAGTAATGGCTTCCTCAGCCGCCATCAGCCGTTTGAGATCACTGACCATCGGCTTCCCGGCTTGCCCGGT CGAGGTGCCATCGTGATTAAATACGGCCACCCAATTCAGCCTCTGGTCGTGGTGGTGGCGCACCTGGCACTGGGTGAGAA GGTGCGTAATACTCAGTTATCCTATCTGGCCCGCTTGCTAGCAGATTACAAATATGTGGTCGTGATGGGCGATTTTAATT GCCGGCTCAACCACTTAGATCATTCACCGCTGGCGGCGTTGGGCTTGCAGACGGTGCGGGCGGATAACCTTAATACCTAC CCCAGCTGGGCTCCGGATCGCCATATCGACCACATCCTATTATCGCCGGAGCTAGAGAGTCGCCATACTCGTGTACTCTC TGATTGCCTACTGTCGGATCACCTGCCTCTGGCCACGGAAATTATCATCCCTGACGAGGTGATCGCGGCTACCCGGGAGC ACCGATTGCCCTTAATTGACTGA
Upstream 100 bases:
>100_bases GGCAAGTATTTGGTAAAGCGCGAAAACGTGAAGAGCAACGAGGAGCTGTTCAAGGTGATTGAATTCTTGGTGAACAAGGA AAAGACAGGCAGCTGATATT
Downstream 100 bases:
>100_bases CCGGAGCCGGTGGAGCGGCTGCTGATTGCACTCTAGCCAGAGAAAATTGCCATGACACTGTCATCTTGTCGGTGCAGGTT GTTCCCATGAAGGCATCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein; Metal-Dependent Hydrolase
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MLLDRARLAYRDWKARPAGFSFAREGARKTRQTREVLLPQDTVKLMSFNIQAGIGSQKFGDYITGSWKHLVAHPRSVETI EQIAQVLSHFDVVGLQEVDGGSLRSRNMNQLVHLASMAGFPVWHQQLNRNLGRFGQFSNGFLSRHQPFEITDHRLPGLPG RGAIVIKYGHPIQPLVVVVAHLALGEKVRNTQLSYLARLLADYKYVVVMGDFNCRLNHLDHSPLAALGLQTVRADNLNTY PSWAPDRHIDHILLSPELESRHTRVLSDCLLSDHLPLATEIIIPDEVIAATREHRLPLID
Sequences:
>Translated_300_residues MLLDRARLAYRDWKARPAGFSFAREGARKTRQTREVLLPQDTVKLMSFNIQAGIGSQKFGDYITGSWKHLVAHPRSVETI EQIAQVLSHFDVVGLQEVDGGSLRSRNMNQLVHLASMAGFPVWHQQLNRNLGRFGQFSNGFLSRHQPFEITDHRLPGLPG RGAIVIKYGHPIQPLVVVVAHLALGEKVRNTQLSYLARLLADYKYVVVMGDFNCRLNHLDHSPLAALGLQTVRADNLNTY PSWAPDRHIDHILLSPELESRHTRVLSDCLLSDHLPLATEIIIPDEVIAATREHRLPLID >Mature_300_residues MLLDRARLAYRDWKARPAGFSFAREGARKTRQTREVLLPQDTVKLMSFNIQAGIGSQKFGDYITGSWKHLVAHPRSVETI EQIAQVLSHFDVVGLQEVDGGSLRSRNMNQLVHLASMAGFPVWHQQLNRNLGRFGQFSNGFLSRHQPFEITDHRLPGLPG RGAIVIKYGHPIQPLVVVVAHLALGEKVRNTQLSYLARLLADYKYVVVMGDFNCRLNHLDHSPLAALGLQTVRADNLNTY PSWAPDRHIDHILLSPELESRHTRVLSDCLLSDHLPLATEIIIPDEVIAATREHRLPLID
Specific function: Unknown
COG id: COG3568
COG function: function code R; Metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33822; Mature: 33822
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLDRARLAYRDWKARPAGFSFAREGARKTRQTREVLLPQDTVKLMSFNIQAGIGSQKFG CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCCHHHC DYITGSWKHLVAHPRSVETIEQIAQVLSHFDVVGLQEVDGGSLRSRNMNQLVHLASMAGF CCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHCCC PVWHQQLNRNLGRFGQFSNGFLSRHQPFEITDHRLPGLPGRGAIVIKYGHPIQPLVVVVA HHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHH HLALGEKVRNTQLSYLARLLADYKYVVVMGDFNCRLNHLDHSPLAALGLQTVRADNLNTY HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEECCCCCCHHHHHHHHHHCCCCCCCC PSWAPDRHIDHILLSPELESRHTRVLSDCLLSDHLPLATEIIIPDEVIAATREHRLPLID CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCC >Mature Secondary Structure MLLDRARLAYRDWKARPAGFSFAREGARKTRQTREVLLPQDTVKLMSFNIQAGIGSQKFG CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCCHHHC DYITGSWKHLVAHPRSVETIEQIAQVLSHFDVVGLQEVDGGSLRSRNMNQLVHLASMAGF CCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHCCC PVWHQQLNRNLGRFGQFSNGFLSRHQPFEITDHRLPGLPGRGAIVIKYGHPIQPLVVVVA HHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHH HLALGEKVRNTQLSYLARLLADYKYVVVMGDFNCRLNHLDHSPLAALGLQTVRADNLNTY HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEECCCCCCHHHHHHHHHHCCCCCCCC PSWAPDRHIDHILLSPELESRHTRVLSDCLLSDHLPLATEIIIPDEVIAATREHRLPLID CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA