| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835507
Identifier: 110835507
GI number: 110835507
Start: 2992813
End: 2994009
Strand: Direct
Name: 110835507
Synonym: ABO_2646
Alternate gene names: NA
Gene position: 2992813-2994009 (Clockwise)
Preceding gene: 110835503
Following gene: 110835513
Centisome position: 95.92
GC content: 56.39
Gene sequence:
>1197_bases ATGACTCAGTCTGCTGTGGATGGATTATTGGGCCACGAGCGAGAGGATCTACTCGACACATTGTACGAGGCGCCGCAAGC CCCTGACGCTTGGCCACGCTTTCTGGCACAAGCCGTAAGCGCCACCCGATCGCGCTCCGCCCGCATGCTCGTACTCGACC GTCGGGCACAAACCGTGCTCTCCAGCATCAAGCACAATATTGATGACACAGACCATCAGGCTTATGTGGATCACTATGTG AATGCCTGCCCCTGGCGCCCGGAATTAAAAGATAAGCCCCCAGGCCAGCTGTATTCCACCTTTCTGGATTTCTCCTGTCG GCAAAACGCGTTCTACCGCACCGAATTCTATAACGACTGGGCCCGCGCCCAAGACATCCACCATGGCGTATGCGGCACCG TTTGGCAGGATGAAGACCACACCGTCCAGCTGCTAATTCAGCGCACCAAAGATCAAAGCCACTACAGCCGGGAAGAAACT GACCAAATCAACGACTTGGTGATGCATGTGCGCCGTGCCGTACGGCTGCAAACCCAATTCAGCGCCCTGAAGCACCAAAA CCAAGCTCTCCAGCAAACACTGGATATCCAGGCCCAGCCCTTCGCCCTGCTTGATGCCCAGGGCACGCTAGTACACGTTA GTCAGGAAGCCGAAGCGCTAATTGAAGCGCACCCGCACATGACGTTAGCGAATCGCAAACTAACCTTCCATGATGTACGC CAGCAATCGGAGTTATTGCATCAATTGGGCCAGGTAACGCACCCCAATCCCTCCTTACGTGGTAGCGGCGACGTGATTGC CGTTCCCCTGAACAGCCACCAGGTTACCCGCTGCCTCATTTCCCCCATGCATCCCGGAACAGCCCCCGGCGACTTCAATG CCCACCCAACGCCCCTCGCCATCGTCTATTTTCAGGACCCACTGGGTGACATTGAGGTGGACCTAGACAGCCTAATGCAG CTGTTCGAATTATCCGAAGCGGAAGCCCGAGTGGCCGCAGGCATTGCTAAAGGACTATCGCCCCAGCAAATTGCCGATAA TCATTTTCTCTCTGTCCACACTGTCCGCACACAGCTGAAAAGCACCTTCCAGAAAACCGGCACCATGCGCCAGACAGAGC TAGCAAAGCAAGTACTTACTTCTCCTGCAGCCCGCCGGTGGCGTCGCCCGCCGCTGAATCTGAGCTGCTCTGCATAG
Upstream 100 bases:
>100_bases CATCTGCTTCTCCTATTCCCCAAAGGGCCACATCTGTTATTTACATTCAATTTCCGGTCCAAATCGGATAAATTAAGGCT TCATTAGGGGAATACAACCA
Downstream 100 bases:
>100_bases CCTTGCGAGCCACCGCCATAAACAGATCAAACTGATAGGCAAAACGCCAATCCTTCTGCCGCAACTCATCGAGGGAATAC CAGCCAATATCACTGACCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Transcriptional Regulator LuxR Family; Transcriptional Regulator LuxR Family Protein; Regulatory Protein LuxR; Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; Response Regulator Receiver Protein
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MTQSAVDGLLGHEREDLLDTLYEAPQAPDAWPRFLAQAVSATRSRSARMLVLDRRAQTVLSSIKHNIDDTDHQAYVDHYV NACPWRPELKDKPPGQLYSTFLDFSCRQNAFYRTEFYNDWARAQDIHHGVCGTVWQDEDHTVQLLIQRTKDQSHYSREET DQINDLVMHVRRAVRLQTQFSALKHQNQALQQTLDIQAQPFALLDAQGTLVHVSQEAEALIEAHPHMTLANRKLTFHDVR QQSELLHQLGQVTHPNPSLRGSGDVIAVPLNSHQVTRCLISPMHPGTAPGDFNAHPTPLAIVYFQDPLGDIEVDLDSLMQ LFELSEAEARVAAGIAKGLSPQQIADNHFLSVHTVRTQLKSTFQKTGTMRQTELAKQVLTSPAARRWRRPPLNLSCSA
Sequences:
>Translated_398_residues MTQSAVDGLLGHEREDLLDTLYEAPQAPDAWPRFLAQAVSATRSRSARMLVLDRRAQTVLSSIKHNIDDTDHQAYVDHYV NACPWRPELKDKPPGQLYSTFLDFSCRQNAFYRTEFYNDWARAQDIHHGVCGTVWQDEDHTVQLLIQRTKDQSHYSREET DQINDLVMHVRRAVRLQTQFSALKHQNQALQQTLDIQAQPFALLDAQGTLVHVSQEAEALIEAHPHMTLANRKLTFHDVR QQSELLHQLGQVTHPNPSLRGSGDVIAVPLNSHQVTRCLISPMHPGTAPGDFNAHPTPLAIVYFQDPLGDIEVDLDSLMQ LFELSEAEARVAAGIAKGLSPQQIADNHFLSVHTVRTQLKSTFQKTGTMRQTELAKQVLTSPAARRWRRPPLNLSCSA >Mature_397_residues TQSAVDGLLGHEREDLLDTLYEAPQAPDAWPRFLAQAVSATRSRSARMLVLDRRAQTVLSSIKHNIDDTDHQAYVDHYVN ACPWRPELKDKPPGQLYSTFLDFSCRQNAFYRTEFYNDWARAQDIHHGVCGTVWQDEDHTVQLLIQRTKDQSHYSREETD QINDLVMHVRRAVRLQTQFSALKHQNQALQQTLDIQAQPFALLDAQGTLVHVSQEAEALIEAHPHMTLANRKLTFHDVRQ QSELLHQLGQVTHPNPSLRGSGDVIAVPLNSHQVTRCLISPMHPGTAPGDFNAHPTPLAIVYFQDPLGDIEVDLDSLMQL FELSEAEARVAAGIAKGLSPQQIADNHFLSVHTVRTQLKSTFQKTGTMRQTELAKQVLTSPAARRWRRPPLNLSCSA
Specific function: Unknown
COG id: COG2771
COG function: function code K; DNA-binding HTH domain-containing proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44909; Mature: 44778
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS00082 EXTRADIOL_DIOXYGENAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSAVDGLLGHEREDLLDTLYEAPQAPDAWPRFLAQAVSATRSRSARMLVLDRRAQTVL CCCHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHH SSIKHNIDDTDHQAYVDHYVNACPWRPELKDKPPGQLYSTFLDFSCRQNAFYRTEFYNDW HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHH ARAQDIHHGVCGTVWQDEDHTVQLLIQRTKDQSHYSREETDQINDLVMHVRRAVRLQTQF HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH SALKHQNQALQQTLDIQAQPFALLDAQGTLVHVSQEAEALIEAHPHMTLANRKLTFHDVR HHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECHHHHHHHHCCCCEEECCCCCHHHHHH QQSELLHQLGQVTHPNPSLRGSGDVIAVPLNSHQVTRCLISPMHPGTAPGDFNAHPTPLA HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE IVYFQDPLGDIEVDLDSLMQLFELSEAEARVAAGIAKGLSPQQIADNHFLSVHTVRTQLK EEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHH STFQKTGTMRQTELAKQVLTSPAARRWRRPPLNLSCSA HHHHHHCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCC >Mature Secondary Structure TQSAVDGLLGHEREDLLDTLYEAPQAPDAWPRFLAQAVSATRSRSARMLVLDRRAQTVL CCHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHH SSIKHNIDDTDHQAYVDHYVNACPWRPELKDKPPGQLYSTFLDFSCRQNAFYRTEFYNDW HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHH ARAQDIHHGVCGTVWQDEDHTVQLLIQRTKDQSHYSREETDQINDLVMHVRRAVRLQTQF HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH SALKHQNQALQQTLDIQAQPFALLDAQGTLVHVSQEAEALIEAHPHMTLANRKLTFHDVR HHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECHHHHHHHHCCCCEEECCCCCHHHHHH QQSELLHQLGQVTHPNPSLRGSGDVIAVPLNSHQVTRCLISPMHPGTAPGDFNAHPTPLA HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE IVYFQDPLGDIEVDLDSLMQLFELSEAEARVAAGIAKGLSPQQIADNHFLSVHTVRTQLK EEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHH STFQKTGTMRQTELAKQVLTSPAARRWRRPPLNLSCSA HHHHHHCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA