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The map label for this gene is yggW [C]

Identifier: 110835441

GI number: 110835441

Start: 2920205

End: 2921389

Strand: Direct

Name: yggW [C]

Synonym: ABO_2580

Alternate gene names: 110835441

Gene position: 2920205-2921389 (Clockwise)

Preceding gene: 110835439

Following gene: 110835442

Centisome position: 93.59

GC content: 59.16

Gene sequence:

>1185_bases
ATGGCCTACTCATTCTCTGGCCGCCTGCTTTTTATGCCCCTCAAAAACCCGCCCCTCTCACTCTACATCCACACCCCTTG
GTGTGTGCGCAAATGCCCCTATTGCGACTTTAACTCCCATGAGCGCGGCGAGATTCCTGAGGCGGCCTACCTGCAAGCCC
TGCTCACCGACCTAGAACAGGACCTGCCCCTGATCGGCGAGCGCACGGTAGAAACCGTGTTCATCGGCGGGGGCACACCA
AGCCTTCTATCCGCTGATTTTTACCAGCAGCTTTTCCACGGCATTCGGCAAAGGCTGGCCCTGCACCCAAACGTGGAAAT
CACCCTCGAGGCCAACCCCGGCACCCTGGAAAATGGCCGCTTCCAAGGCTTTCGTGAGGCAGGCATCAACCGCCTATCCA
TCGGTGCCCAGAGCTTCAACAATGCCCATTTGCAAGCATTGGGGCGCATCCACAATGCCAGCGCCGCCATTAACGCCGCT
CACCAAGCGCGGGAGGCCGGCTTCGACAATTTCAATCTGGATATCATGCATGCGCTGCCCGGCCAGACCCATGCACAGGC
CCTAGACGACCTACAACAGGCCATCGCACTGCAGCCCACTCACCTAAGCTGGTACGAACTCACCATCGAGCCCAACACCG
TTTTCTACCGCTCGCCACCGGTTCAACCAGACAGCGACACCATGGCTGACACCGAGCAGGCAGGCTTCGCCTTACTGGCA
GAGCACGGCTACCTGCGTTATGAAATCTCCGCCTTCGCGCAACCTGGGCGCCCCTGCCGACATAACCTCAATTACTGGCA
GTTCGGTGACTATCTCGGCATCGGGGCCGGCGCCCACGGCAAAATCACTGCCGCCGCCCAGGGTGACGTGCATCGCTACC
AGAAAACCCGAAAACCCGAAGACTACCTGGCAGACGCGGCCCATGCTCGCCGCCAGCACCAGCCCATTGCCCGCGAAGAC
CGTCTGTTCGAAGCCCTGCTCAATGGCCTACGCTTAACCCATGGCCTCTGCTGGCAAACACTGGAAGACGCGACCGGAGA
GCCTGTTGCACAGTGGCGGCACCAATTAACGCCATTCGAACAGCAGGGATTGCTGACCCTCACAGACCAACGGCTGGCCT
GTACCGATAATGGCTTACGCCACCTAAACGGATTGCTGGAAAAGTTAGCCGCTGTGCTTTTATAA

Upstream 100 bases:

>100_bases
CCATCGATCACTAAAAAATGGAGCATGATTAACAGCACGAATACGATAGTCTCGTTTCGTTATCACTTAGCCGCGCGCCA
TTATCCATTTAATTGCTAAC

Downstream 100 bases:

>100_bases
ACAGCGCGCCTGCCTGTACGCTGAGAAAAGCGCTTGAACCCTATAGCAAGGCTATTCAAACTGAATGGTGGGATAACACA
AGACAATGACTATGACAAAA

Product: coproporphyrinogen oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MAYSFSGRLLFMPLKNPPLSLYIHTPWCVRKCPYCDFNSHERGEIPEAAYLQALLTDLEQDLPLIGERTVETVFIGGGTP
SLLSADFYQQLFHGIRQRLALHPNVEITLEANPGTLENGRFQGFREAGINRLSIGAQSFNNAHLQALGRIHNASAAINAA
HQAREAGFDNFNLDIMHALPGQTHAQALDDLQQAIALQPTHLSWYELTIEPNTVFYRSPPVQPDSDTMADTEQAGFALLA
EHGYLRYEISAFAQPGRPCRHNLNYWQFGDYLGIGAGAHGKITAAAQGDVHRYQKTRKPEDYLADAAHARRQHQPIARED
RLFEALLNGLRLTHGLCWQTLEDATGEPVAQWRHQLTPFEQQGLLTLTDQRLACTDNGLRHLNGLLEKLAAVLL

Sequences:

>Translated_394_residues
MAYSFSGRLLFMPLKNPPLSLYIHTPWCVRKCPYCDFNSHERGEIPEAAYLQALLTDLEQDLPLIGERTVETVFIGGGTP
SLLSADFYQQLFHGIRQRLALHPNVEITLEANPGTLENGRFQGFREAGINRLSIGAQSFNNAHLQALGRIHNASAAINAA
HQAREAGFDNFNLDIMHALPGQTHAQALDDLQQAIALQPTHLSWYELTIEPNTVFYRSPPVQPDSDTMADTEQAGFALLA
EHGYLRYEISAFAQPGRPCRHNLNYWQFGDYLGIGAGAHGKITAAAQGDVHRYQKTRKPEDYLADAAHARRQHQPIARED
RLFEALLNGLRLTHGLCWQTLEDATGEPVAQWRHQLTPFEQQGLLTLTDQRLACTDNGLRHLNGLLEKLAAVLL
>Mature_393_residues
AYSFSGRLLFMPLKNPPLSLYIHTPWCVRKCPYCDFNSHERGEIPEAAYLQALLTDLEQDLPLIGERTVETVFIGGGTPS
LLSADFYQQLFHGIRQRLALHPNVEITLEANPGTLENGRFQGFREAGINRLSIGAQSFNNAHLQALGRIHNASAAINAAH
QAREAGFDNFNLDIMHALPGQTHAQALDDLQQAIALQPTHLSWYELTIEPNTVFYRSPPVQPDSDTMADTEQAGFALLAE
HGYLRYEISAFAQPGRPCRHNLNYWQFGDYLGIGAGAHGKITAAAQGDVHRYQKTRKPEDYLADAAHARRQHQPIAREDR
LFEALLNGLRLTHGLCWQTLEDATGEPVAQWRHQLTPFEQQGLLTLTDQRLACTDNGLRHLNGLLEKLAAVLL

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=373, Percent_Identity=35.656836461126, Blast_Score=197, Evalue=1e-50,
Organism=Escherichia coli, GI1789325, Length=379, Percent_Identity=49.0765171503958, Blast_Score=345, Evalue=3e-96,
Organism=Escherichia coli, GI87082341, Length=369, Percent_Identity=27.3712737127371, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 44010; Mature: 43879

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSFSGRLLFMPLKNPPLSLYIHTPWCVRKCPYCDFNSHERGEIPEAAYLQALLTDLEQ
CCEEECCCEEEEECCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
DLPLIGERTVETVFIGGGTPSLLSADFYQQLFHGIRQRLALHPNVEITLEANPGTLENGR
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
FQGFREAGINRLSIGAQSFNNAHLQALGRIHNASAAINAAHQAREAGFDNFNLDIMHALP
CCCHHHHCCCEEEECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
GQTHAQALDDLQQAIALQPTHLSWYELTIEPNTVFYRSPPVQPDSDTMADTEQAGFALLA
CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCHHHCCEEEEE
EHGYLRYEISAFAQPGRPCRHNLNYWQFGDYLGIGAGAHGKITAAAQGDVHRYQKTRKPE
CCCEEEEEEEHHCCCCCCHHCCCCCEECCCEEEECCCCCCCEEEECCCHHHHHHHCCCCH
DYLADAAHARRQHQPIAREDRLFEALLNGLRLTHGLCWQTLEDATGEPVAQWRHQLTPFE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
QQGLLTLTDQRLACTDNGLRHLNGLLEKLAAVLL
CCCCEEECCCEEECCCCHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
AYSFSGRLLFMPLKNPPLSLYIHTPWCVRKCPYCDFNSHERGEIPEAAYLQALLTDLEQ
CEEECCCEEEEECCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
DLPLIGERTVETVFIGGGTPSLLSADFYQQLFHGIRQRLALHPNVEITLEANPGTLENGR
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
FQGFREAGINRLSIGAQSFNNAHLQALGRIHNASAAINAAHQAREAGFDNFNLDIMHALP
CCCHHHHCCCEEEECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
GQTHAQALDDLQQAIALQPTHLSWYELTIEPNTVFYRSPPVQPDSDTMADTEQAGFALLA
CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCHHHCCEEEEE
EHGYLRYEISAFAQPGRPCRHNLNYWQFGDYLGIGAGAHGKITAAAQGDVHRYQKTRKPE
CCCEEEEEEEHHCCCCCCHHCCCCCEECCCEEEECCCCCCCEEEECCCHHHHHHHCCCCH
DYLADAAHARRQHQPIAREDRLFEALLNGLRLTHGLCWQTLEDATGEPVAQWRHQLTPFE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
QQGLLTLTDQRLACTDNGLRHLNGLLEKLAAVLL
CCCCEEECCCEEECCCCHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]