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The map label for this gene is rdgB [H]

Identifier: 110835439

GI number: 110835439

Start: 2918941

End: 2919531

Strand: Direct

Name: rdgB [H]

Synonym: ABO_2578

Alternate gene names: 110835439

Gene position: 2918941-2919531 (Clockwise)

Preceding gene: 110835438

Following gene: 110835441

Centisome position: 93.55

GC content: 54.99

Gene sequence:

>591_bases
ATGGAAAAACTCGTTCTCGCCTCCGGCAACGCAAAAAAACTCGCTGAAATGCAGCGCCTATTGGCACCACTCAACATTGA
AGTCGTTGCCCAGAGTGAATTTTGCGTACCGGAAGCCGATGAAACCGGCAGTACCTTTGTGGAAAACGCCATTATCAAAG
CTCGCAATGCCTGCAAGCACACCGGGCTACCCGCCATCGCCGATGATTCCGGACTGGAGGTCAGCGCCCTGAACGGTAGC
CCTGGCATTTTTTCAGCACGCTTTTCTGGGGTCGGTGCCACTGACGCCAAGAACAATGCTCTGCTGGTAGAAATGCTAGC
GGAAATCCCAGAAGACGCGCGCCAGGCCCGCTACGTGGCACTGCTTGTTCTGATGCGCCACGAAGACGACGCCACCCCAC
TAATCTGCCAAGGTAGCTGGAACGGACGCATTGTGCTGGAGCCCCAAGGTGACCAAGGCTTTGGCTATGATCCACACTTT
TTCGTGGAAGAAAAAGGCTGCACCGCCGCACAATTACCCGCGGATGAGAAAAACGCCATCAGCCACCGGGGCAAAGCTAT
GGCCACCTTAATCAAGGCGCTGAAAGAGTAA

Upstream 100 bases:

>100_bases
TTTTGCTACTCGCCGGCGCGACGAAGAGTTGAAGCGTTTAATACAACGCTTCTCATATTGCCGCTTGTAGCACGCACCTA
ACCGACGTCAGGAACCCCCA

Downstream 100 bases:

>100_bases
ATACCGCGAGCCGTTAGCGTTCTCCGGGCTCATTCAGGCCCATGCTAGCAAACGTTATGCAGGACCGGAAAAGGTGTGGG
CGACAGCGGCGGTGATCTCA

Product: Ham1 protein

Products: NA

Alternate protein names: Nucleoside triphosphate phosphohydrolase; NTPase [H]

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MEKLVLASGNAKKLAEMQRLLAPLNIEVVAQSEFCVPEADETGSTFVENAIIKARNACKHTGLPAIADDSGLEVSALNGS
PGIFSARFSGVGATDAKNNALLVEMLAEIPEDARQARYVALLVLMRHEDDATPLICQGSWNGRIVLEPQGDQGFGYDPHF
FVEEKGCTAAQLPADEKNAISHRGKAMATLIKALKE

Sequences:

>Translated_196_residues
MEKLVLASGNAKKLAEMQRLLAPLNIEVVAQSEFCVPEADETGSTFVENAIIKARNACKHTGLPAIADDSGLEVSALNGS
PGIFSARFSGVGATDAKNNALLVEMLAEIPEDARQARYVALLVLMRHEDDATPLICQGSWNGRIVLEPQGDQGFGYDPHF
FVEEKGCTAAQLPADEKNAISHRGKAMATLIKALKE
>Mature_196_residues
MEKLVLASGNAKKLAEMQRLLAPLNIEVVAQSEFCVPEADETGSTFVENAIIKARNACKHTGLPAIADDSGLEVSALNGS
PGIFSARFSGVGATDAKNNALLVEMLAEIPEDARQARYVALLVLMRHEDDATPLICQGSWNGRIVLEPQGDQGFGYDPHF
FVEEKGCTAAQLPADEKNAISHRGKAMATLIKALKE

Specific function: Hydrolyzes O6 atom-containing purine bases deoxyinosine triphosphate (dITP) and xanthosine triphosphate (XTP) as well as 2'-deoxy-N-6-hydroxylaminopurine triposphate (dHAPTP) to nucleotide monophosphate and pyrophosphate. Probably excludes non- standard p

COG id: COG0127

COG function: function code F; Xanthosine triphosphate pyrophosphatase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAM1 NTPase family [H]

Homologues:

Organism=Homo sapiens, GI15626999, Length=191, Percent_Identity=31.9371727748691, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI1789324, Length=195, Percent_Identity=55.3846153846154, Blast_Score=226, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002637
- InterPro:   IPR020922 [H]

Pfam domain/function: PF01725 Ham1p_like [H]

EC number: =3.6.1.15 [H]

Molecular weight: Translated: 20990; Mature: 20990

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLVLASGNAKKLAEMQRLLAPLNIEVVAQSEFCVPEADETGSTFVENAIIKARNACKH
CCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TGLPAIADDSGLEVSALNGSPGIFSARFSGVGATDAKNNALLVEMLAEIPEDARQARYVA
CCCCCEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
LLVLMRHEDDATPLICQGSWNGRIVLEPQGDQGFGYDPHFFVEEKGCTAAQLPADEKNAI
HHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEECCCCCCHHHH
SHRGKAMATLIKALKE
HHCHHHHHHHHHHHCC
>Mature Secondary Structure
MEKLVLASGNAKKLAEMQRLLAPLNIEVVAQSEFCVPEADETGSTFVENAIIKARNACKH
CCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
TGLPAIADDSGLEVSALNGSPGIFSARFSGVGATDAKNNALLVEMLAEIPEDARQARYVA
CCCCCEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
LLVLMRHEDDATPLICQGSWNGRIVLEPQGDQGFGYDPHFFVEEKGCTAAQLPADEKNAI
HHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEECCCCCCHHHH
SHRGKAMATLIKALKE
HHCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]