| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is hisB
Identifier: 110835142
GI number: 110835142
Start: 2600236
End: 2600850
Strand: Reverse
Name: hisB
Synonym: ABO_2281
Alternate gene names: 110835142
Gene position: 2600850-2600236 (Counterclockwise)
Preceding gene: 110835144
Following gene: 110835141
Centisome position: 83.36
GC content: 55.28
Gene sequence:
>615_bases ATGAGCAAGCGAAGCGCTACCGTAGAGCGCAACACCCTGGAAACCCAGATTCAAGCCACTATCAATTTGGATGGTACCGG GCAGTGCACGCTGGATACGGGTCTGCCGTTCCTTGAGCACATGCTGGATCAGGTGGCCCGTCATGGCCTGGTTGATTTGG ATATCAAAGCCAAGGGTGATCTGCACATCGATGCCCACCACACGGTGGAAGATATCGGTATCACCCTTGGGCAGGCCTTC GCCAAGGCTGTCGGTGATAAAAAAGGCGTTCGCCGTTACGGCCATGCCTATGTGCCGCTGGATGAAGCGCTGTCACGGGT GGTGCTGGATCTGTCTGGCCGGCCTGGGCTGGAGATGTTTGTGGAATTTACGCGAGGCAGCATTGGCGGCTTTGATGTGG ATCTGTTCTATGAATTTTTCCAGGGCTTCGTGAACCACGCCATGATTACCCTGCATATTGATAACCTTCGCGGTAAAAAC GCGCATCACCAGGCCGAGACCGTCTTTAAGGCGTTTGGCCGTGCACTGCGTATGGCCGTAGAGCCTGATCCTCGTATGGA TGGTATTACGCCCTCCACGAAGGGCACCCTGAGCGAAAGTGGCGATAGCCAGTAA
Upstream 100 bases:
>100_bases TAAGGGTGTGGGCTTCTACGCTGATCGGCATCTGTCCTCTCCGCTGGTTAGGTCCTGTTGGGGTGCGTATAATAGCCGGT CCAATGCCTGGGAGGTATAG
Downstream 100 bases:
>100_bases GCAGCCCAGTAGCAATTACAAGGACAGCCCCGAGTATGAGCGAAGTCGTTGCCGTTATTGATTACGGAATGGGTAACCTG CACTCCGCAGGTAAGGCGCT
Product: imidazoleglycerol-phosphate dehydratase
Products: NA
Alternate protein names: IGPD
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MSKRSATVERNTLETQIQATINLDGTGQCTLDTGLPFLEHMLDQVARHGLVDLDIKAKGDLHIDAHHTVEDIGITLGQAF AKAVGDKKGVRRYGHAYVPLDEALSRVVLDLSGRPGLEMFVEFTRGSIGGFDVDLFYEFFQGFVNHAMITLHIDNLRGKN AHHQAETVFKAFGRALRMAVEPDPRMDGITPSTKGTLSESGDSQ
Sequences:
>Translated_204_residues MSKRSATVERNTLETQIQATINLDGTGQCTLDTGLPFLEHMLDQVARHGLVDLDIKAKGDLHIDAHHTVEDIGITLGQAF AKAVGDKKGVRRYGHAYVPLDEALSRVVLDLSGRPGLEMFVEFTRGSIGGFDVDLFYEFFQGFVNHAMITLHIDNLRGKN AHHQAETVFKAFGRALRMAVEPDPRMDGITPSTKGTLSESGDSQ >Mature_203_residues SKRSATVERNTLETQIQATINLDGTGQCTLDTGLPFLEHMLDQVARHGLVDLDIKAKGDLHIDAHHTVEDIGITLGQAFA KAVGDKKGVRRYGHAYVPLDEALSRVVLDLSGRPGLEMFVEFTRGSIGGFDVDLFYEFFQGFVNHAMITLHIDNLRGKNA HHQAETVFKAFGRALRMAVEPDPRMDGITPSTKGTLSESGDSQ
Specific function: Histidine biosynthesis; sixth step. Histidine biosynthesis; eighth step. [C]
COG id: COG0131
COG function: function code E; Imidazoleglycerol-phosphate dehydratase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the imidazoleglycerol-phosphate dehydratase family
Homologues:
Organism=Escherichia coli, GI87082027, Length=195, Percent_Identity=47.6923076923077, Blast_Score=174, Evalue=3e-45, Organism=Saccharomyces cerevisiae, GI6324776, Length=221, Percent_Identity=41.6289592760181, Blast_Score=165, Evalue=5e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HIS7_ALCBS (Q0VM69)
Other databases:
- EMBL: AM286690 - RefSeq: YP_694001.1 - ProteinModelPortal: Q0VM69 - SMR: Q0VM69 - STRING: Q0VM69 - GeneID: 4212198 - GenomeReviews: AM286690_GR - KEGG: abo:ABO_2281 - NMPDR: fig|393595.12.peg.2283 - eggNOG: COG0131 - HOGENOM: HBG289010 - OMA: TLHVETL - PhylomeDB: Q0VM69 - BioCyc: ABOR393595:ABO_2281-MONOMER - GO: GO:0005737 - HAMAP: MF_00076 - InterPro: IPR000807 - InterPro: IPR020565 - InterPro: IPR020568
Pfam domain/function: PF00475 IGPD; SSF54211 Ribosomal_S5_D2-typ_fold
EC number: =4.2.1.19
Molecular weight: Translated: 22390; Mature: 22258
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: PS00954 IGP_DEHYDRATASE_1; PS00955 IGP_DEHYDRATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRSATVERNTLETQIQATINLDGTGQCTLDTGLPFLEHMLDQVARHGLVDLDIKAKGD CCCCCCCHHHHHHHEEEEEEEEECCCCCEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC LHIDAHHTVEDIGITLGQAFAKAVGDKKGVRRYGHAYVPLDEALSRVVLDLSGRPGLEMF EEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH VEFTRGSIGGFDVDLFYEFFQGFVNHAMITLHIDNLRGKNAHHQAETVFKAFGRALRMAV HHHHCCCCCCCHHHHHHHHHHHHHHCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC EPDPRMDGITPSTKGTLSESGDSQ CCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SKRSATVERNTLETQIQATINLDGTGQCTLDTGLPFLEHMLDQVARHGLVDLDIKAKGD CCCCCCHHHHHHHEEEEEEEEECCCCCEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC LHIDAHHTVEDIGITLGQAFAKAVGDKKGVRRYGHAYVPLDEALSRVVLDLSGRPGLEMF EEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH VEFTRGSIGGFDVDLFYEFFQGFVNHAMITLHIDNLRGKNAHHQAETVFKAFGRALRMAV HHHHCCCCCCCHHHHHHHHHHHHHHCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC EPDPRMDGITPSTKGTLSESGDSQ CCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA