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The map label for this gene is secB

Identifier: 110835133

GI number: 110835133

Start: 2593044

End: 2593517

Strand: Reverse

Name: secB

Synonym: ABO_2272

Alternate gene names: 110835133

Gene position: 2593517-2593044 (Counterclockwise)

Preceding gene: 110835134

Following gene: 110835131

Centisome position: 83.12

GC content: 52.74

Gene sequence:

>474_bases
ATGGCTGATGAACAGCAACAGGTTTTCCAACTGCAGCGTATCTACCTCAAAGACACCTCGTTCGAGTGCCCGGGGGCACC
GGAAGTGTTCCTGCAGGAATGGAAGCCTAAGGTGAACGTGCAGCTGAACAACAGTGCCCGTCGCGTTGGTGAAGGCGATG
AGTTCGAAGTGGAAATTACCGTGACGGTGACCGCCAAGGACGAAGCTGAAGAAAAGACGTTTTATTTGGTAGAAGTAAAG
CAGGCTGGGATATTCACTGTGAAAGGCATTGACGGTGAAGAGCGTGCTCAGCTTCTGGGCGCCTATTGCCCTAATCTGTT
GTTCCCATATGTCCGTGAAGTGGTATCGGACCTGGTTGCGAAAGGCTCATTCCCGCAAATGGTGCTGCAACCGATCAACT
TCGATGCGCTGTATCAACAGCAGCGTGATCAGCAGCAAGGCAACGCAGCTGCCGCTGGTGAGACCGTTCAGTAA

Upstream 100 bases:

>100_bases
TAATGATCACGCCGTCGGTGGCTGTGATGAACTTTTTGCTCTAGAGCGAGCGGGGGCGCTCGATGCTCTGCTCGGAGCGG
ATCAGTAACAGGAGAAGAAT

Downstream 100 bases:

>100_bases
TGGTTTAATTGTTGAAAATAAAGAATGGATAACGGCGCGCATTGGCGTTTTCGTTGTCTTCTAATGCAAGAGGCCGCGCC
CAAGTTTGGGTGCGGCCTCT

Product: protein-transport protein SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MADEQQQVFQLQRIYLKDTSFECPGAPEVFLQEWKPKVNVQLNNSARRVGEGDEFEVEITVTVTAKDEAEEKTFYLVEVK
QAGIFTVKGIDGEERAQLLGAYCPNLLFPYVREVVSDLVAKGSFPQMVLQPINFDALYQQQRDQQQGNAAAAGETVQ

Sequences:

>Translated_157_residues
MADEQQQVFQLQRIYLKDTSFECPGAPEVFLQEWKPKVNVQLNNSARRVGEGDEFEVEITVTVTAKDEAEEKTFYLVEVK
QAGIFTVKGIDGEERAQLLGAYCPNLLFPYVREVVSDLVAKGSFPQMVLQPINFDALYQQQRDQQQGNAAAAGETVQ
>Mature_156_residues
ADEQQQVFQLQRIYLKDTSFECPGAPEVFLQEWKPKVNVQLNNSARRVGEGDEFEVEITVTVTAKDEAEEKTFYLVEVKQ
AGIFTVKGIDGEERAQLLGAYCPNLLFPYVREVVSDLVAKGSFPQMVLQPINFDALYQQQRDQQQGNAAAAGETVQ

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=145, Percent_Identity=47.5862068965517, Blast_Score=152, Evalue=8e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_ALCBS (Q0VM78)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_693992.1
- ProteinModelPortal:   Q0VM78
- SMR:   Q0VM78
- STRING:   Q0VM78
- GeneID:   4212645
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2272
- NMPDR:   fig|393595.12.peg.2274
- eggNOG:   NOG134581
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q0VM78
- BioCyc:   ABOR393595:ABO_2272-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17664; Mature: 17533

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADEQQQVFQLQRIYLKDTSFECPGAPEVFLQEWKPKVNVQLNNSARRVGEGDEFEVEIT
CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEE
VTVTAKDEAEEKTFYLVEVKQAGIFTVKGIDGEERAQLLGAYCPNLLFPYVREVVSDLVA
EEEEECCCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGSFPQMVLQPINFDALYQQQRDQQQGNAAAAGETVQ
CCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ADEQQQVFQLQRIYLKDTSFECPGAPEVFLQEWKPKVNVQLNNSARRVGEGDEFEVEIT
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEE
VTVTAKDEAEEKTFYLVEVKQAGIFTVKGIDGEERAQLLGAYCPNLLFPYVREVVSDLVA
EEEEECCCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGSFPQMVLQPINFDALYQQQRDQQQGNAAAAGETVQ
CCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA