| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is mutL [H]
Identifier: 110835066
GI number: 110835066
Start: 2516697
End: 2518565
Strand: Reverse
Name: mutL [H]
Synonym: ABO_2205
Alternate gene names: 110835066
Gene position: 2518565-2516697 (Counterclockwise)
Preceding gene: 110835067
Following gene: 110835065
Centisome position: 80.72
GC content: 60.14
Gene sequence:
>1869_bases TTGTCCAAAATTCAGCTGCTTGATTCCCGCCTTGCTAACCAGATTGCCGCCGGTGAAGTGGTTGAGCGCCCCGCGTCTGT GCTCAAAGAGCTGCTGGAGAATGCGCTGGACGCTGGCTCGGAATCCATCAGTGTGGATGTGGAGCAGGGCGGGGTGAAAC TGCTGCGGGTACGCGACAACGGCAGTGGCATCGAGCGCGATGATTTACCGCTGGCTCTGTCGCGCCATGCCACCAGCAAA ATCCGGGGGCTTGATGATCTGGAAGCCATTGGCACGTTGGGGTTTCGCGGTGAGGCTCTGGCGGCGATCAGTTCTGTCTC CCGGTTGAGTCTGGCCAGTAATGTGGAGGGGGAGCCGGAAGGTTGGCAGGTGACCGTGGAGGGGCGTGATATGGCGCCGT CAGTATCGCCGGCAGGGCATCCCCGTGGCACCACCGTCACCATGCGCGATTTGTTCTTCAATACTCCGGCGCGGCGTCGT TTCCTGCGCACCGAAAAAACGGAATTCAATCATCTCGAAGAGGTGTTCCGGCGCATTGCCCTGAGCGAATTCAATACCGC TTTTCGTCTTACCCATAACCAGAAAGTGATTCACCAGCTGCCTGCTGGGTTGGATGACACTTTGCGGGCAGCGCGGGTGG CCAAGCTGTGTGGCAAGGGCTTCATTGAGCAGGCGGTACCGGTGGATGTGGAGCGTGATGGTTTGCGGCTGCATGGCTGG ATGGGGCTGCCCACTTTTTCCCGGTCCCAGGCGGACCTACAGTATTTCTATGTAAATGGTCGGGTCATCCGGGACAAGGT GGTTAGCCATGCGGTGCGTCAGGCTTACTCGGATGTGCTTTATCATGGCCGCCATCCAGCCTATGTGCTGTTTCTGGAAC TGGATCCGGCCATGGTGGATGTGAATGTTCACCCCACCAAGCACGAAGTGCGTTTCCGCGAGCAGCGCATGGTGCATGGT TTCTTGTATAGCTCGCTGCACCGTGTCATTGCCGGGGTGCGGCCCGGCCAGGAACTGGCGGGTTCAGTGGCCGATGAAGG CGGGCCAGCTGCAGGGATGGATGCAGCCATGGCGCCGAGCCAGGGTAATATGTCGCTGACTTCGCCGACGGGCTCGGGGG GCTCCCTGTCTCATCCTCCCGGGCAGGCTTATCCTTCCACGGGGGGAGGCGTGTTCGGCTATGGCCAGGGCGCACGTCAG GCGGATGCTTATGGGGCGTTGGTCCGTGGGCATGTAGGTGAGTCGGCGCCGGCGGTAATGCCGCCGGCCAACGAAAATGA AACGGTACCGCCATTAGGGTATGCGGTGGCGCAATTGCACGGCATTTTTATTTTGGCGGAGAACGAGCAAGGGATGGTGG TGGTGGATATGCACGCCGCCCACGAACGGATTACCTACGAACGGCTCAAGCAGAGCTGGGCGGAAGACAAGGTGCGTAGC CAGCCGTTGCTAGTGCCGGTGTCGCTGGCGGTGTCATCCCGGGAGGCGGACTTTGCTGAGCAGCAGCCGGAGGTCTTTTC CAGGCTGGGGTTTGTGGTTCAGCGTGCTGGGCCGGAGACTCTGGTGGTGCGCGAAGTGCCGGCCCTTCTTCGTAATGGCG ACAGCGAATCCATGGTGCGAGATGTGCTATCGGACCTGCTGGCCGAAGGCAGCAGCGAACGCATTGCGCAAAAGCTCGAT GAGCTGCTGTCTACTATGGCCTGCCACGGCAGTGTGCGTGCCAATCGCCGCCTCACCATTGCAGAAATGAACGCGCTGTT GCGTGATATGGAAGCCACTGAGCGTTCCGGCCAATGCAACCATGGCCGGCCCACCTGGACCCAGATGAGTATTAAGGATC TGGATCGACTGTTCATGCGGGGGCAATGA
Upstream 100 bases:
>100_bases GACATTCCGCTTGCACGCAATACGCGCCATGCTGGCACGCTAATTTCCAAACGTGCTGGGTGCGGTGTGGCGGGTCAGAT AATTTCCTAAAGGGTGTGTT
Downstream 100 bases:
>100_bases ACCATGACCGCTTGCACGCGACACCCAAGCAGGCAACACGTGGAGGGCACGCGGTCTTTCGCGTGTCAGCGTGATGCCTG AAGCGTCTCTGCCTATTTTA
Product: DNA mismatch repair protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 622; Mature: 621
Protein sequence:
>622_residues MSKIQLLDSRLANQIAAGEVVERPASVLKELLENALDAGSESISVDVEQGGVKLLRVRDNGSGIERDDLPLALSRHATSK IRGLDDLEAIGTLGFRGEALAAISSVSRLSLASNVEGEPEGWQVTVEGRDMAPSVSPAGHPRGTTVTMRDLFFNTPARRR FLRTEKTEFNHLEEVFRRIALSEFNTAFRLTHNQKVIHQLPAGLDDTLRAARVAKLCGKGFIEQAVPVDVERDGLRLHGW MGLPTFSRSQADLQYFYVNGRVIRDKVVSHAVRQAYSDVLYHGRHPAYVLFLELDPAMVDVNVHPTKHEVRFREQRMVHG FLYSSLHRVIAGVRPGQELAGSVADEGGPAAGMDAAMAPSQGNMSLTSPTGSGGSLSHPPGQAYPSTGGGVFGYGQGARQ ADAYGALVRGHVGESAPAVMPPANENETVPPLGYAVAQLHGIFILAENEQGMVVVDMHAAHERITYERLKQSWAEDKVRS QPLLVPVSLAVSSREADFAEQQPEVFSRLGFVVQRAGPETLVVREVPALLRNGDSESMVRDVLSDLLAEGSSERIAQKLD ELLSTMACHGSVRANRRLTIAEMNALLRDMEATERSGQCNHGRPTWTQMSIKDLDRLFMRGQ
Sequences:
>Translated_622_residues MSKIQLLDSRLANQIAAGEVVERPASVLKELLENALDAGSESISVDVEQGGVKLLRVRDNGSGIERDDLPLALSRHATSK IRGLDDLEAIGTLGFRGEALAAISSVSRLSLASNVEGEPEGWQVTVEGRDMAPSVSPAGHPRGTTVTMRDLFFNTPARRR FLRTEKTEFNHLEEVFRRIALSEFNTAFRLTHNQKVIHQLPAGLDDTLRAARVAKLCGKGFIEQAVPVDVERDGLRLHGW MGLPTFSRSQADLQYFYVNGRVIRDKVVSHAVRQAYSDVLYHGRHPAYVLFLELDPAMVDVNVHPTKHEVRFREQRMVHG FLYSSLHRVIAGVRPGQELAGSVADEGGPAAGMDAAMAPSQGNMSLTSPTGSGGSLSHPPGQAYPSTGGGVFGYGQGARQ ADAYGALVRGHVGESAPAVMPPANENETVPPLGYAVAQLHGIFILAENEQGMVVVDMHAAHERITYERLKQSWAEDKVRS QPLLVPVSLAVSSREADFAEQQPEVFSRLGFVVQRAGPETLVVREVPALLRNGDSESMVRDVLSDLLAEGSSERIAQKLD ELLSTMACHGSVRANRRLTIAEMNALLRDMEATERSGQCNHGRPTWTQMSIKDLDRLFMRGQ >Mature_621_residues SKIQLLDSRLANQIAAGEVVERPASVLKELLENALDAGSESISVDVEQGGVKLLRVRDNGSGIERDDLPLALSRHATSKI RGLDDLEAIGTLGFRGEALAAISSVSRLSLASNVEGEPEGWQVTVEGRDMAPSVSPAGHPRGTTVTMRDLFFNTPARRRF LRTEKTEFNHLEEVFRRIALSEFNTAFRLTHNQKVIHQLPAGLDDTLRAARVAKLCGKGFIEQAVPVDVERDGLRLHGWM GLPTFSRSQADLQYFYVNGRVIRDKVVSHAVRQAYSDVLYHGRHPAYVLFLELDPAMVDVNVHPTKHEVRFREQRMVHGF LYSSLHRVIAGVRPGQELAGSVADEGGPAAGMDAAMAPSQGNMSLTSPTGSGGSLSHPPGQAYPSTGGGVFGYGQGARQA DAYGALVRGHVGESAPAVMPPANENETVPPLGYAVAQLHGIFILAENEQGMVVVDMHAAHERITYERLKQSWAEDKVRSQ PLLVPVSLAVSSREADFAEQQPEVFSRLGFVVQRAGPETLVVREVPALLRNGDSESMVRDVLSDLLAEGSSERIAQKLDE LLSTMACHGSVRANRRLTIAEMNALLRDMEATERSGQCNHGRPTWTQMSIKDLDRLFMRGQ
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family [H]
Homologues:
Organism=Homo sapiens, GI4557757, Length=316, Percent_Identity=34.4936708860759, Blast_Score=194, Evalue=3e-49, Organism=Homo sapiens, GI4505913, Length=352, Percent_Identity=27.2727272727273, Blast_Score=136, Evalue=7e-32, Organism=Homo sapiens, GI310128478, Length=352, Percent_Identity=27.2727272727273, Blast_Score=135, Evalue=9e-32, Organism=Homo sapiens, GI189458898, Length=423, Percent_Identity=26.241134751773, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI4505911, Length=423, Percent_Identity=26.241134751773, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI189458896, Length=416, Percent_Identity=25.7211538461538, Blast_Score=125, Evalue=1e-28, Organism=Homo sapiens, GI310128480, Length=305, Percent_Identity=25.9016393442623, Blast_Score=103, Evalue=6e-22, Organism=Homo sapiens, GI263191589, Length=228, Percent_Identity=26.7543859649123, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI91992162, Length=270, Percent_Identity=25.5555555555556, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI91992160, Length=270, Percent_Identity=25.5555555555556, Blast_Score=77, Evalue=4e-14, Organism=Escherichia coli, GI1790612, Length=611, Percent_Identity=40.2618657937807, Blast_Score=407, Evalue=1e-115, Organism=Caenorhabditis elegans, GI71991825, Length=323, Percent_Identity=34.6749226006192, Blast_Score=180, Evalue=2e-45, Organism=Caenorhabditis elegans, GI17562796, Length=365, Percent_Identity=27.1232876712329, Blast_Score=129, Evalue=4e-30, Organism=Saccharomyces cerevisiae, GI6323819, Length=353, Percent_Identity=32.5779036827195, Blast_Score=203, Evalue=5e-53, Organism=Saccharomyces cerevisiae, GI6324247, Length=360, Percent_Identity=25, Blast_Score=116, Evalue=9e-27, Organism=Saccharomyces cerevisiae, GI6325093, Length=710, Percent_Identity=20.9859154929577, Blast_Score=103, Evalue=7e-23, Organism=Saccharomyces cerevisiae, GI6323063, Length=353, Percent_Identity=25.4957507082153, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI17136968, Length=316, Percent_Identity=35.7594936708861, Blast_Score=197, Evalue=2e-50, Organism=Drosophila melanogaster, GI17136970, Length=360, Percent_Identity=27.5, Blast_Score=108, Evalue=1e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014763 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C [H]
EC number: NA
Molecular weight: Translated: 67888; Mature: 67757
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00058 DNA_MISMATCH_REPAIR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIQLLDSRLANQIAAGEVVERPASVLKELLENALDAGSESISVDVEQGGVKLLRVRDN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECC GSGIERDDLPLALSRHATSKIRGLDDLEAIGTLGFRGEALAAISSVSRLSLASNVEGEPE CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC GWQVTVEGRDMAPSVSPAGHPRGTTVTMRDLFFNTPARRRFLRTEKTEFNHLEEVFRRIA CEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHH LSEFNTAFRLTHNQKVIHQLPAGLDDTLRAARVAKLCGKGFIEQAVPVDVERDGLRLHGW HHHCCCEEEEECCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEEE MGLPTFSRSQADLQYFYVNGRVIRDKVVSHAVRQAYSDVLYHGRHPAYVLFLELDPAMVD ECCCCCCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEE VNVHPTKHEVRFREQRMVHGFLYSSLHRVIAGVRPGQELAGSVADEGGPAAGMDAAMAPS EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCC QGNMSLTSPTGSGGSLSHPPGQAYPSTGGGVFGYGQGARQADAYGALVRGHVGESAPAVM CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC PPANENETVPPLGYAVAQLHGIFILAENEQGMVVVDMHAAHERITYERLKQSWAEDKVRS CCCCCCCCCCCHHHHHHHHCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC QPLLVPVSLAVSSREADFAEQQPEVFSRLGFVVQRAGPETLVVREVPALLRNGDSESMVR CCEEEEEEEEECCCCCCHHHCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCHHHHHH DVLSDLLAEGSSERIAQKLDELLSTMACHGSVRANRRLTIAEMNALLRDMEATERSGQCN HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC HGRPTWTQMSIKDLDRLFMRGQ CCCCCEEECCHHHHHHHHHCCC >Mature Secondary Structure SKIQLLDSRLANQIAAGEVVERPASVLKELLENALDAGSESISVDVEQGGVKLLRVRDN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECC GSGIERDDLPLALSRHATSKIRGLDDLEAIGTLGFRGEALAAISSVSRLSLASNVEGEPE CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC GWQVTVEGRDMAPSVSPAGHPRGTTVTMRDLFFNTPARRRFLRTEKTEFNHLEEVFRRIA CEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHH LSEFNTAFRLTHNQKVIHQLPAGLDDTLRAARVAKLCGKGFIEQAVPVDVERDGLRLHGW HHHCCCEEEEECCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEEE MGLPTFSRSQADLQYFYVNGRVIRDKVVSHAVRQAYSDVLYHGRHPAYVLFLELDPAMVD ECCCCCCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEE VNVHPTKHEVRFREQRMVHGFLYSSLHRVIAGVRPGQELAGSVADEGGPAAGMDAAMAPS EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCC QGNMSLTSPTGSGGSLSHPPGQAYPSTGGGVFGYGQGARQADAYGALVRGHVGESAPAVM CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC PPANENETVPPLGYAVAQLHGIFILAENEQGMVVVDMHAAHERITYERLKQSWAEDKVRS CCCCCCCCCCCHHHHHHHHCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC QPLLVPVSLAVSSREADFAEQQPEVFSRLGFVVQRAGPETLVVREVPALLRNGDSESMVR CCEEEEEEEEECCCCCCHHHCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCHHHHHH DVLSDLLAEGSSERIAQKLDELLSTMACHGSVRANRRLTIAEMNALLRDMEATERSGQCN HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCC HGRPTWTQMSIKDLDRLFMRGQ CCCCCEEECCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA