| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835018
Identifier: 110835018
GI number: 110835018
Start: 2465946
End: 2467757
Strand: Reverse
Name: 110835018
Synonym: ABO_2157
Alternate gene names: NA
Gene position: 2467757-2465946 (Counterclockwise)
Preceding gene: 110835019
Following gene: 110835017
Centisome position: 79.09
GC content: 53.92
Gene sequence:
>1812_bases ATGATTGAACAGGAACTGAATCAGCATCCGTTCAGCTTGCTGAGTGAAGCAGGACGCCGCCGTTTGCAGGAAGGAACCGA TCTGGCCTATTTTCAGCCGGAGGATATTATTCTTGACGCGGCCAGTACTAGTGATTCTGTGTTTGTGGTGCACAAGGGGT GTGTGGCAGAACTAGACGTGAATGCGCCGGACAACCGTCGTCAGGTGAATATTTATGCCGCCGGTGATTTGTTCGGAGCG ATCAGCGTATTGAACGGACAAAGCCGTTATCGTTTTTTGGCCGAGCAGCAAACGCTGTGTCATCTGATTCCCGCTAGGCT ATTCCGCGAGCTGTGCGAAAGCGAGCCCGATTTTGGTCATTATTTTAGTCAGTGTCTGGCGGAGAAAAATCAGCGCTTGG CAGAGCGCCGTGAAGGAGGCGTTACTCTGGCGGGCTTTATGCTGGCGCGGGTGGACGAATGCATGCGAGCGCCCTTGATT ATGCCGGAGCGCGCCACTGTGCGTGATGCGGTAGCCGCTTTGAAGCAGCACGGCGTGGATAGTGTGTTGATTGCTCACCG GCAGCATTACGCGATTGTTACCAAGACGGATTTATTAAGCGCTTTGGTGATGCAGGAACAATCGTCGGATACGCCGTTGG TTCAGGTGGCGGAAACCGAACTGGTTACTGTTGCCCCCGCAGATTACTTGTTCGCGGCCCTGACCCTGATGACCCGCCAC AAGGTGGCGCGGGTGGTGGTGATGGAGAGCAATAATGCGGTGGGGGTGGTGGAACTTACCGATGTGCTCAGTTTCTTTTC TAGCCGTTCATATGTGGTGGGGCTGGAAATTGAAAGGGCCGGTACCCTTGAGGCATTGCAGCTAGCCAGTGCCCGCTTGC CGGATCTTGTAAACGCCCTTATGGCTCAGGGTGTAAAAATGCGCTTTGTGATGGATTTGCTGGCCTCACTCAATGGCCGC TTGATGAGTAAGGCTTATGAAATGGTAGTGCCTGCAGAACATCAGCGTGCCAGTCTGATAGTGATGGGGAGCGAAGGGCG CGGTGAACAGATACTGAAAACTGATCAGGATAACGGCCTGATTATTGGCGATCATCAACAGTGGCCAGGCTGTGATCAAG ATATGCAGCGCTTTACTCGCACGTTGCTGTCTCTTGGTTATCCCCCTTGCCCAGGTAATGTCATGGTTTCTAACCCGGAG TGGATCGGGACGGTGTCACGCTGGCAGCGGCGTATCCATGATTGGGCGGAGGATCCCGGGGGAAAAGGGCTGTTGAATCT GACCATTCTCACTGATACCCATACCGTGGCTGGAGATTCAGGGCTGATGGAGACAGTACGCAGCACCTTGTTTTCCCGAT GCAGTGACGATCAGTTATTGATGGCCCATTTTGCCCGTCCGGCCTTGCAATTTTCTACGCCGTTGAATTTATTCGGCTCG CTCAAGAAACCCCAGCATGGTATCGATATTAAGAAGGGAGCCCTGTTCCCATTGATCCACGGCGTGCGAGCCATGGCCTT GCAGTGCCGTATTCAGGAAACCTCCACGTTGGCACGGCTGAAAAAGCTGGTGGCCGCCGGGGCTATGGAACGGGCCTTTG CGGAGGACTTGGGTGAAGCGATGGAATTCTTTAGCGAGCTGCGGCTGTCTCAACAGCTGGCCAAATTGCGAGGCGAGAAT ACCCAGGTAGAAGATAATCATATCGTGGTGCAGCATCTGTCTTCTTTGGAGCGTGATGTGCTGCGCGATGCCCTGCATCT GGTCAGCGATTTCAAGCAGCGCCTGTCGCGTCGTTTTCATCTGGAATACTGA
Upstream 100 bases:
>100_bases AAGCCGGTGCGGGTGATAATTCCGTACCGGCTTTTTGCGTTTTGAGGGCGGCCGAGAGCTGGCCAGAAAGGCAATAAAGA AAAACGGCAGGAGTGGCCTG
Downstream 100 bases:
>100_bases CGATGCCTGGGGACAGGAGGGGAGCTATGCTGTAGTGGCAGACGTTTAAATGGCGTCGAATTTATGATCGATATTGCCAT GGGCGCGGACCTTATGGGCA
Product: CBS domain-containing protein
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; DNA Polymerase III Subunit Epsilon; CBS Signal-Transduction Protein; Cyclic-Nucleotide Signal Transduction Protein; Multidomain-Containing Protein; Nucleotidyltransferase Domain Family Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Methyl-Accepting Chemotaxis Protein A; Nucleotidyltransferases
Number of amino acids: Translated: 603; Mature: 603
Protein sequence:
>603_residues MIEQELNQHPFSLLSEAGRRRLQEGTDLAYFQPEDIILDAASTSDSVFVVHKGCVAELDVNAPDNRRQVNIYAAGDLFGA ISVLNGQSRYRFLAEQQTLCHLIPARLFRELCESEPDFGHYFSQCLAEKNQRLAERREGGVTLAGFMLARVDECMRAPLI MPERATVRDAVAALKQHGVDSVLIAHRQHYAIVTKTDLLSALVMQEQSSDTPLVQVAETELVTVAPADYLFAALTLMTRH KVARVVVMESNNAVGVVELTDVLSFFSSRSYVVGLEIERAGTLEALQLASARLPDLVNALMAQGVKMRFVMDLLASLNGR LMSKAYEMVVPAEHQRASLIVMGSEGRGEQILKTDQDNGLIIGDHQQWPGCDQDMQRFTRTLLSLGYPPCPGNVMVSNPE WIGTVSRWQRRIHDWAEDPGGKGLLNLTILTDTHTVAGDSGLMETVRSTLFSRCSDDQLLMAHFARPALQFSTPLNLFGS LKKPQHGIDIKKGALFPLIHGVRAMALQCRIQETSTLARLKKLVAAGAMERAFAEDLGEAMEFFSELRLSQQLAKLRGEN TQVEDNHIVVQHLSSLERDVLRDALHLVSDFKQRLSRRFHLEY
Sequences:
>Translated_603_residues MIEQELNQHPFSLLSEAGRRRLQEGTDLAYFQPEDIILDAASTSDSVFVVHKGCVAELDVNAPDNRRQVNIYAAGDLFGA ISVLNGQSRYRFLAEQQTLCHLIPARLFRELCESEPDFGHYFSQCLAEKNQRLAERREGGVTLAGFMLARVDECMRAPLI MPERATVRDAVAALKQHGVDSVLIAHRQHYAIVTKTDLLSALVMQEQSSDTPLVQVAETELVTVAPADYLFAALTLMTRH KVARVVVMESNNAVGVVELTDVLSFFSSRSYVVGLEIERAGTLEALQLASARLPDLVNALMAQGVKMRFVMDLLASLNGR LMSKAYEMVVPAEHQRASLIVMGSEGRGEQILKTDQDNGLIIGDHQQWPGCDQDMQRFTRTLLSLGYPPCPGNVMVSNPE WIGTVSRWQRRIHDWAEDPGGKGLLNLTILTDTHTVAGDSGLMETVRSTLFSRCSDDQLLMAHFARPALQFSTPLNLFGS LKKPQHGIDIKKGALFPLIHGVRAMALQCRIQETSTLARLKKLVAAGAMERAFAEDLGEAMEFFSELRLSQQLAKLRGEN TQVEDNHIVVQHLSSLERDVLRDALHLVSDFKQRLSRRFHLEY >Mature_603_residues MIEQELNQHPFSLLSEAGRRRLQEGTDLAYFQPEDIILDAASTSDSVFVVHKGCVAELDVNAPDNRRQVNIYAAGDLFGA ISVLNGQSRYRFLAEQQTLCHLIPARLFRELCESEPDFGHYFSQCLAEKNQRLAERREGGVTLAGFMLARVDECMRAPLI MPERATVRDAVAALKQHGVDSVLIAHRQHYAIVTKTDLLSALVMQEQSSDTPLVQVAETELVTVAPADYLFAALTLMTRH KVARVVVMESNNAVGVVELTDVLSFFSSRSYVVGLEIERAGTLEALQLASARLPDLVNALMAQGVKMRFVMDLLASLNGR LMSKAYEMVVPAEHQRASLIVMGSEGRGEQILKTDQDNGLIIGDHQQWPGCDQDMQRFTRTLLSLGYPPCPGNVMVSNPE WIGTVSRWQRRIHDWAEDPGGKGLLNLTILTDTHTVAGDSGLMETVRSTLFSRCSDDQLLMAHFARPALQFSTPLNLFGS LKKPQHGIDIKKGALFPLIHGVRAMALQCRIQETSTLARLKKLVAAGAMERAFAEDLGEAMEFFSELRLSQQLAKLRGEN TQVEDNHIVVQHLSSLERDVLRDALHLVSDFKQRLSRRFHLEY
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67199; Mature: 67199
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEQELNQHPFSLLSEAGRRRLQEGTDLAYFQPEDIILDAASTSDSVFVVHKGCVAELDV CCCCHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCEEEEECCCEEEEEC NAPDNRRQVNIYAAGDLFGAISVLNGQSRYRFLAEQQTLCHLIPARLFRELCESEPDFGH CCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH YFSQCLAEKNQRLAERREGGVTLAGFMLARVDECMRAPLIMPERATVRDAVAALKQHGVD HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC SVLIAHRQHYAIVTKTDLLSALVMQEQSSDTPLVQVAETELVTVAPADYLFAALTLMTRH HHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCHHHHHHHHHHHHHH KVARVVVMESNNAVGVVELTDVLSFFSSRSYVVGLEIERAGTLEALQLASARLPDLVNAL HHEEEEEEECCCCEEEEEHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCHHHHHHH MAQGVKMRFVMDLLASLNGRLMSKAYEMVVPAEHQRASLIVMGSEGRGEQILKTDQDNGL HHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCE IIGDHQQWPGCDQDMQRFTRTLLSLGYPPCPGNVMVSNPEWIGTVSRWQRRIHDWAEDPG EEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCC GKGLLNLTILTDTHTVAGDSGLMETVRSTLFSRCSDDQLLMAHFARPALQFSTPLNLFGS CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHCCCCHHHHHC LKKPQHGIDIKKGALFPLIHGVRAMALQCRIQETSTLARLKKLVAAGAMERAFAEDLGEA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEFFSELRLSQQLAKLRGENTQVEDNHIVVQHLSSLERDVLRDALHLVSDFKQRLSRRFH HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LEY CCC >Mature Secondary Structure MIEQELNQHPFSLLSEAGRRRLQEGTDLAYFQPEDIILDAASTSDSVFVVHKGCVAELDV CCCCHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCEEEEECCCEEEEEC NAPDNRRQVNIYAAGDLFGAISVLNGQSRYRFLAEQQTLCHLIPARLFRELCESEPDFGH CCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH YFSQCLAEKNQRLAERREGGVTLAGFMLARVDECMRAPLIMPERATVRDAVAALKQHGVD HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC SVLIAHRQHYAIVTKTDLLSALVMQEQSSDTPLVQVAETELVTVAPADYLFAALTLMTRH HHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCHHHHHHHHHHHHHH KVARVVVMESNNAVGVVELTDVLSFFSSRSYVVGLEIERAGTLEALQLASARLPDLVNAL HHEEEEEEECCCCEEEEEHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCHHHHHHH MAQGVKMRFVMDLLASLNGRLMSKAYEMVVPAEHQRASLIVMGSEGRGEQILKTDQDNGL HHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCE IIGDHQQWPGCDQDMQRFTRTLLSLGYPPCPGNVMVSNPEWIGTVSRWQRRIHDWAEDPG EEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCC GKGLLNLTILTDTHTVAGDSGLMETVRSTLFSRCSDDQLLMAHFARPALQFSTPLNLFGS CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHCCCCHHHHHC LKKPQHGIDIKKGALFPLIHGVRAMALQCRIQETSTLARLKKLVAAGAMERAFAEDLGEA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEFFSELRLSQQLAKLRGENTQVEDNHIVVQHLSSLERDVLRDALHLVSDFKQRLSRRFH HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LEY CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA