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The map label for this gene is 110835017

Identifier: 110835017

GI number: 110835017

Start: 2465296

End: 2465817

Strand: Reverse

Name: 110835017

Synonym: ABO_2156

Alternate gene names: NA

Gene position: 2465817-2465296 (Counterclockwise)

Preceding gene: 110835018

Following gene: 110835016

Centisome position: 79.03

GC content: 54.41

Gene sequence:

>522_bases
GTGGTGGCCATCGATTGCGAAACCACCGGGCTGGATAGTCGTACTGCCGAGCTGGTGTCTATTGCTGCGGTGGTGATAAA
AGAAGGGCGGGTGCTGAGCAGCCAGAGCCTGAATGTGAAGTTGGCGGCTCCAGATAGCCTTAGAGAAGACAGCATTTGCA
TTCATCGGCTGAGGCCAGTGGACTTGGAGGGTGGGGCGAGTATCCGTGAAGCGCTAGAGGCGCTGCTGGCGTTGATTGAT
AACCGGCCTTTGGTGGGCTGGTGTGTGGCGTTTGATGTGGCCATGATCAACCGCTATCTGAGACCGTTAATGGGCTTTGA
TTTGCCTAATGATACCCTTGAACTGTCTGCGCTATACCAGCGAAAAATGCGTTACTGGCAGCCCGATATAACACCGGATT
TGCGCTTTGATGCCATGGCTTCGGCCTTACAAGTGCCGGTAATTGAGCGCCATACTGCCCGCGGAGACGCGGTGACTAGT
GCATTGATGTACCTGCAGTTGCAGAAATCCACACTTGGCTGA

Upstream 100 bases:

>100_bases
GCTGTAGTGGCAGACGTTTAAATGGCGTCGAATTTATGATCGATATTGCCATGGGCGCGGACCTTATGGGCATCTTTTCA
GACCCTATAGCGGTGATCAG

Downstream 100 bases:

>100_bases
GCCGGTGTTTGCTTGGTAGGGAGAAAATAAACGTGCTGATGTTTTATGCTGAAAAAACGGCTCTGATTGCGGGCCTTTGT
TTTGTTGCGTATGCCTACCT

Product: DNA polymerase III subunit epsilon

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Epsilon Subunit; Exonuclease RNAse T And DNA Polymerase III; Exonuclease; Exonuclease RNAase T And DNA Polymerase III; Exonuclease Superfamily

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MVAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPVDLEGGASIREALEALLALID
NRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELSALYQRKMRYWQPDITPDLRFDAMASALQVPVIERHTARGDAVTS
ALMYLQLQKSTLG

Sequences:

>Translated_173_residues
MVAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPVDLEGGASIREALEALLALID
NRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELSALYQRKMRYWQPDITPDLRFDAMASALQVPVIERHTARGDAVTS
ALMYLQLQKSTLG
>Mature_173_residues
MVAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPVDLEGGASIREALEALLALID
NRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELSALYQRKMRYWQPDITPDLRFDAMASALQVPVIERHTARGDAVTS
ALMYLQLQKSTLG

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 19125; Mature: 19125

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPV
CEEEECCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCCCCCHHHHCCCC
DLEGGASIREALEALLALIDNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELSALYQ
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RKMRYWQPDITPDLRFDAMASALQVPVIERHTARGDAVTSALMYLQLQKSTLG
HHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPV
CEEEECCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCCCCCHHHHCCCC
DLEGGASIREALEALLALIDNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELSALYQ
CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RKMRYWQPDITPDLRFDAMASALQVPVIERHTARGDAVTSALMYLQLQKSTLG
HHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA