| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835014
Identifier: 110835014
GI number: 110835014
Start: 2458775
End: 2459980
Strand: Reverse
Name: 110835014
Synonym: ABO_2153
Alternate gene names: NA
Gene position: 2459980-2458775 (Counterclockwise)
Preceding gene: 110835016
Following gene: 110835009
Centisome position: 78.84
GC content: 51.49
Gene sequence:
>1206_bases ATGATAGCAAGAAAAGCCACGTACCTGTGCGGTGCCTTGGTGTTGGCGCAAGCGGGGGGAGCCGGTGCGGATACCACGCT GGAGGAGCGTATCGTTGTGCTGGAAGAACGCATGGATGGTATCAAGAGTGGAAATACCCAAATCGATTTTGGTGGCTTTA TCAAAGCAGATACCATGATGAGTAAATACAGCGATGGCGATCTGGCTAAAGGCTCTACCGGTCGTGATTTTATGGTGCCC TCAACCATTCCCGTTGGTGGCGGTGGCAGTTCGGAAGAGCTGGACTTTATCGCCAAGCAAAGTCGCTTCTGGCTGAAGAG TGAAACGATGACTTCTGCTGGTGCGGTCCAGGGGTATATCGAAATTGATTTTCAGACCACCGGCCAAGGGGATGAGCGCA TCAGTAACAGCTATTCGCCCCGTATTCGCCATGCCTATCTGGCTTGGGGGAATTGGCTATTCGGACAAACATGGTCCACC TTTTTCAACGTAAGTGCGCTGCCAGAAACGTTGGATTTTGTCGGTGCTGCGGGCACCGTTTTTGAACGACAACCACAGAT ACGCTATACCTCGGGGCCGGTGATGCTGGCTTTTGAAAACCCCTCTACGACCTTATACGGAGGTGATAGCAACCCTAGCG AATATGATGACAACAATGTTCCAGATATCGTTGCTCGCTATAACCTGACCGGAGGTTGGGGCAATGTGAGTCTGTCGGCA ATGGGAAGGCAGTTGAAATATGAAGATGACGTTGGTGGCACGCCTTATGATGAGGATGAATATGGTTACGGCTTGTCTGT TGCCGGCCGTGTCATGCTGGGTGCTATGGACGATATTCGTTTCCAGGCGCACTACGGTAATGCTCTAGGGCGTTATACCA CGCTCAATGCGTTCCGCTCAGGGCAAATCGAAGCGGATGGCAGTATTGAGTTGATTGATCAGTGGAGTGGTGTGTTGGCT TTGCGTCATCATTGGAGTGATCGCTGGCGTTCCAATTTCGCAGTTTCTGTAAGTGAGGCGGATAACCCGGATACGGTGGC AGCAACCACCAGTAAAACCATCCACAGTGCCCATGCCAATCTGATCTGGCAGGTGGCAGAACCTCTGACTCTTGGTGCTG AACTGATCTATGGCAGTCGGGAACTTGAGAATGGTGATGACGGTAACCTTAAACGGGTGCAGTTCACCGCCAAATATGCC TTCTAG
Upstream 100 bases:
>100_bases CACAGGCGTACGACCTATGGCTAATGGTGTGTCAGGAAAGCGCTCAGCAAGCTGTCAGGAAGAGACATTGACGTGCTGAA GACAATAAGAGGACAGGGCC
Downstream 100 bases:
>100_bases AAAGGGTCGTTATACGCGAGCATGCAAAAACGGGACACCGAAGCGTCCCGTTTTGCATGCAAGTACGTTGCGTACAGCGT GTGAGGGGTTTTCTTAATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 401; Mature: 401
Protein sequence:
>401_residues MIARKATYLCGALVLAQAGGAGADTTLEERIVVLEERMDGIKSGNTQIDFGGFIKADTMMSKYSDGDLAKGSTGRDFMVP STIPVGGGGSSEELDFIAKQSRFWLKSETMTSAGAVQGYIEIDFQTTGQGDERISNSYSPRIRHAYLAWGNWLFGQTWST FFNVSALPETLDFVGAAGTVFERQPQIRYTSGPVMLAFENPSTTLYGGDSNPSEYDDNNVPDIVARYNLTGGWGNVSLSA MGRQLKYEDDVGGTPYDEDEYGYGLSVAGRVMLGAMDDIRFQAHYGNALGRYTTLNAFRSGQIEADGSIELIDQWSGVLA LRHHWSDRWRSNFAVSVSEADNPDTVAATTSKTIHSAHANLIWQVAEPLTLGAELIYGSRELENGDDGNLKRVQFTAKYA F
Sequences:
>Translated_401_residues MIARKATYLCGALVLAQAGGAGADTTLEERIVVLEERMDGIKSGNTQIDFGGFIKADTMMSKYSDGDLAKGSTGRDFMVP STIPVGGGGSSEELDFIAKQSRFWLKSETMTSAGAVQGYIEIDFQTTGQGDERISNSYSPRIRHAYLAWGNWLFGQTWST FFNVSALPETLDFVGAAGTVFERQPQIRYTSGPVMLAFENPSTTLYGGDSNPSEYDDNNVPDIVARYNLTGGWGNVSLSA MGRQLKYEDDVGGTPYDEDEYGYGLSVAGRVMLGAMDDIRFQAHYGNALGRYTTLNAFRSGQIEADGSIELIDQWSGVLA LRHHWSDRWRSNFAVSVSEADNPDTVAATTSKTIHSAHANLIWQVAEPLTLGAELIYGSRELENGDDGNLKRVQFTAKYA F >Mature_401_residues MIARKATYLCGALVLAQAGGAGADTTLEERIVVLEERMDGIKSGNTQIDFGGFIKADTMMSKYSDGDLAKGSTGRDFMVP STIPVGGGGSSEELDFIAKQSRFWLKSETMTSAGAVQGYIEIDFQTTGQGDERISNSYSPRIRHAYLAWGNWLFGQTWST FFNVSALPETLDFVGAAGTVFERQPQIRYTSGPVMLAFENPSTTLYGGDSNPSEYDDNNVPDIVARYNLTGGWGNVSLSA MGRQLKYEDDVGGTPYDEDEYGYGLSVAGRVMLGAMDDIRFQAHYGNALGRYTTLNAFRSGQIEADGSIELIDQWSGVLA LRHHWSDRWRSNFAVSVSEADNPDTVAATTSKTIHSAHANLIWQVAEPLTLGAELIYGSRELENGDDGNLKRVQFTAKYA F
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43771; Mature: 43771
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIARKATYLCGALVLAQAGGAGADTTLEERIVVLEERMDGIKSGNTQIDFGGFIKADTMM CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCEEEHHHHH SKYSDGDLAKGSTGRDFMVPSTIPVGGGGSSEELDFIAKQSRFWLKSETMTSAGAVQGYI HHCCCCCCCCCCCCCCEECCCCEECCCCCCCCHHHHHHHCCCEEEECCCCCCCCCEEEEE EIDFQTTGQGDERISNSYSPRIRHAYLAWGNWLFGQTWSTFFNVSALPETLDFVGAAGTV EEEEEECCCCHHHHHCCCCCCCEEEEEEECCEECCCCHHHHEECCCCHHHHHHHCCCCHH FERQPQIRYTSGPVMLAFENPSTTLYGGDSNPSEYDDNNVPDIVARYNLTGGWGNVSLSA CCCCCCEEEECCCEEEEEECCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEHHH MGRQLKYEDDVGGTPYDEDEYGYGLSVAGRVMLGAMDDIRFQAHYGNALGRYTTLNAFRS HCCCCEECCCCCCCCCCCCCCCCCHHECCEEEEECCCCEEEEEECCCCCCCEEEEHHHCC GQIEADGSIELIDQWSGVLALRHHWSDRWRSNFAVSVSEADNPDTVAATTSKTIHSAHAN CCEECCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHH LIWQVAEPLTLGAELIYGSRELENGDDGNLKRVQFTAKYAF EEEEECCCHHHCHHEEECCCCCCCCCCCCEEEEEEEEEECC >Mature Secondary Structure MIARKATYLCGALVLAQAGGAGADTTLEERIVVLEERMDGIKSGNTQIDFGGFIKADTMM CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCEEEHHHHH SKYSDGDLAKGSTGRDFMVPSTIPVGGGGSSEELDFIAKQSRFWLKSETMTSAGAVQGYI HHCCCCCCCCCCCCCCEECCCCEECCCCCCCCHHHHHHHCCCEEEECCCCCCCCCEEEEE EIDFQTTGQGDERISNSYSPRIRHAYLAWGNWLFGQTWSTFFNVSALPETLDFVGAAGTV EEEEEECCCCHHHHHCCCCCCCEEEEEEECCEECCCCHHHHEECCCCHHHHHHHCCCCHH FERQPQIRYTSGPVMLAFENPSTTLYGGDSNPSEYDDNNVPDIVARYNLTGGWGNVSLSA CCCCCCEEEECCCEEEEEECCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEHHH MGRQLKYEDDVGGTPYDEDEYGYGLSVAGRVMLGAMDDIRFQAHYGNALGRYTTLNAFRS HCCCCEECCCCCCCCCCCCCCCCCHHECCEEEEECCCCEEEEEECCCCCCCEEEEHHHCC GQIEADGSIELIDQWSGVLALRHHWSDRWRSNFAVSVSEADNPDTVAATTSKTIHSAHAN CCEECCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHH LIWQVAEPLTLGAELIYGSRELENGDDGNLKRVQFTAKYAF EEEEECCCHHHCHHEEECCCCCCCCCCCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA