Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is 110834946

Identifier: 110834946

GI number: 110834946

Start: 2374205

End: 2375134

Strand: Reverse

Name: 110834946

Synonym: ABO_2085

Alternate gene names: NA

Gene position: 2375134-2374205 (Counterclockwise)

Preceding gene: 110834947

Following gene: 110834945

Centisome position: 76.12

GC content: 56.99

Gene sequence:

>930_bases
ATGACACAAGGCCGTAGCATTCGACTGTTTCTGGTAGACGGTGCGCCCAATGGCCTACTTTCTGCCGAGATTATGAACTG
GACCGGCCATGTGCTTACCGGTCCACGCTCCAAACTTAGCGAACTGGTGCCGCGCCCGGAAGTGGGGCGCACGGGCATCT
ATTTTTTGGTGGGGCCAGACCCGGATAACAGCTTTCGCTCGTTAGTTTATATCGGCGAATCCGACGATGTGGGTAAGCGC
CTCAAGCAGCACAATAGACCGGAGGGGCAAGGCGGTAAGGATTTTTGGGAAAAAGTCTGCTTGGTTACCAGCAAAGACCA
AAACCTGACCAAGGCCCATGTTAAACACCTGGAGAGCCTGCTGATCCAAAATGCTCGCGACGTGGCGCGCTGCACCTTGG
TCAACGGTACCGCCCACGACTATATCAATCTGCCGGAAGCGGACCTGGCCGACATGGCCTTCTTTCTGGAACAGATCCGC
ACCGTGCTGCCGGTGCTGGGGTTCGACTTCCTCCGCGACAGCACACGCCCTGCCAGCCAGCCCAAGACACAACCAGCAGA
ACCGCAGGAATCTCCTTATTTTGTGCTGGAACTGCCTAAACACAATATCAAGGCTCGTGGCCAGGAAGTGGATGGCGAAT
TTTTTGTGCTGCAGGGCTCTCTGGCCCGCGAAGAGTGGGTGGGTACCGATCGCGGCTATAAGACCCTGTTCAATCAGTTG
CTGGAAGACAGAATCCTGATCCCCACCGATAGCGGCCTCACCACTTTTACCGCTGACCAGGCATTCTCCAGCCCCAGCGG
CGCTGCTGCCGTCATCTCCGGCCGTAGCGCTAACGGGCGCACCCAGTGGGCCGTGGAAGGAACTGGCAAGACCTATGGAG
ATTGGCAGGATGAGCAAGTGTCGGCTAGTACAGGGCAGGGTTTGGATTAA

Upstream 100 bases:

>100_bases
AACTAACTACCGGACAGTGATTTAGGTTTTCCCTCGGCCAGCAGAGGGGCTTAAGTACCGCCTCAATATAAGAAAAATCG
ATAATGGAAAAGGATATCCC

Downstream 100 bases:

>100_bases
GGAATAACAATGAAGATCGGTTTTGACTTTGGTACCAGCTTTTCAGCATTGGCAGTCTATCGGGATGGTGAGATTCACCG
AATCATGTTTGATGGTGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: Peptide-Methionine-S-Oxide Reductase; Excinuclease ABC Subunit C

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPDPDNSFRSLVYIGESDDVGKR
LKQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESLLIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIR
TVLPVLGFDFLRDSTRPASQPKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQL
LEDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQVSASTGQGLD

Sequences:

>Translated_309_residues
MTQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPDPDNSFRSLVYIGESDDVGKR
LKQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESLLIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIR
TVLPVLGFDFLRDSTRPASQPKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQL
LEDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQVSASTGQGLD
>Mature_308_residues
TQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPDPDNSFRSLVYIGESDDVGKRL
KQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESLLIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIRT
VLPVLGFDFLRDSTRPASQPKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQLL
EDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQVSASTGQGLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34047; Mature: 33915

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50164 UVRC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPD
CCCCCEEEEEEECCCCCCEEEHEEECCCCCEEECCHHHHHHHCCCCCCCCCEEEEEECCC
PDNSFRSLVYIGESDDVGKRLKQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESL
CCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHH
LIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIRTVLPVLGFDFLRDSTRPASQ
HHHCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQL
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHH
LEDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQV
HHCCEEEECCCCCEEEECHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCEE
SASTGQGLD
CCCCCCCCC
>Mature Secondary Structure 
TQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPD
CCCCEEEEEEECCCCCCEEEHEEECCCCCEEECCHHHHHHHCCCCCCCCCEEEEEECCC
PDNSFRSLVYIGESDDVGKRLKQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESL
CCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHH
LIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIRTVLPVLGFDFLRDSTRPASQ
HHHCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQL
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHH
LEDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQV
HHCCEEEECCCCCEEEECHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCEE
SASTGQGLD
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA