| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834940
Identifier: 110834940
GI number: 110834940
Start: 2364789
End: 2366903
Strand: Reverse
Name: 110834940
Synonym: ABO_2079
Alternate gene names: NA
Gene position: 2366903-2364789 (Counterclockwise)
Preceding gene: 110834941
Following gene: 110834939
Centisome position: 75.86
GC content: 43.07
Gene sequence:
>2115_bases ATGGAAAAGATAAAAGATAATGTTGGAAATACACACAAAGACGCATCTAGTGTGTTGGAGTGTGATTTTCCCATGATTGA AATAAGTGAAGTTGCAGAGCAAGAAAGTTGGCGGAAAGAAATAAATAGACCCGTCTATCATATTCATAAGTGGTGGGCTA CGAGGCTTGGCTCGGTTTTCAGAGCAATTGTGTTGGGGGCATTGAGTCCGCCTGGGAAAGGTATTTGGGATGTTTTTTAT GAAAAGCATAATTTCTCTGGAAAGGTTGTTCTTGATCCATTTATGGGTAGTGGGACGACTCTTGGTGAAGCTGTAAAGCT TGGGGCTAAGGCTGTTGGGTGTGATATTAATCCGGTTAGCTCTTTTCTCGTTCGCCAGGCATTTACTCCAGTTCACGATT CTAAGATAAAGGCAGCATTTTCTTCTTTGGAAGATAAGGTCGCGTCAGAAATAAAATACTATTATCGGACAGTGGACCCA CATACTGGGGGGATTATCCCGGTGCTATACTATTTTTGGGTTAAGACTGTTTTTACTCCAACGGGTGAAGAGATTCCGCT TTTCTCTCGTTACGTTTTCTCCCAGAACGCGTATCCAAAGAAAAAGCCGAAAGCGCAGATAGTTTGCCCTAAATGCTGGG GTGTCTCTGAAGGAAGATACGATGACACAGAGTTTATATGTGGGAGTTGTGGTCATGAATTTAATCCACAGAAAGGCCCC GTAAGTGGTCAGTCTGTAACTTCAAAGGATGGCAAGCTATACAGAATAAAAGACCTTCTTTCTGAAGGTGGGTCTCCACC TAAACATAGAATGTATGGCGTATTGGCGCTTCGCCAAGATGGCTCAAAGATCTACTTGCCTGCTCGTGAACAAGATTTTG CCCTATACAATGAGGCAAAAAAACGTCTTGAGGAAGAGAACCTTCCCTTGCCAGATAGTCCTGTTAGGGAAGGACATAAT ACGAACCAAGCGCGCGGTTATAACTACAAGTATTGGCGGGACTTTTTTAATTCTCGCCAACTTCTTTGCTTGGGTATGCT GCTCAAGGAAATACTGAATATTGAGGATAGAGTAATTCAGGAGCAAATGCTTTGCCTTTTTTCGGGTGTTCTTGAGTTTA ATAATCTTTTTTGTAGTTTCAAAGGTGAAGGTACGGGTGCAGTTAGACATATGTTTTCTAACCATATCCTCAAGCCGGAG AGGACTCCTTTGGAGAACTCTGTATGGGGAAACAAAAAAAGTAGTGGCACCTTCAGTACCTTGTTCGAGTCGCGACTTCT CCGGGCAAAGAAATACCTAGATGACCCGTTTGAGGTTGCGATTAAACGTGACCTTTTAGGAAAGCGATTGGGGTCAAGCA AGGTCGTTGCTAGTAGCCCTGTAGAGGCGAAAATAGTTGAATCCTGGGAAGAGCTAGATTCAGCCGAAAAAGGTTTGCTT GTTCTTAATGGTGATAGCTCTAAGCTATCGGTTCCGGAGAAATCTATAGATGCGGTTATAACCGATCCTCCTTATTTTGA CTTCGTTCACTATTCGGAGCTAAGCGATTTTTTCTTTGCCTGGCTTTCTCCTGTTCTGAAAGATAGGTACGAATGGTTTT CTCGTGCCGACTCATCAGGTGAGGGTGAGGTCCAGCATAAAGATCCATTAGTTTTTTCGCGGCAGTTATCATCTGTTTTT TCTGAGGCTTGTAGAGTGCTGAAGGATACAGGGGTATTGGCCTTTAGTTTTCATCATTCTAGGCCAGAAGGTTGGGCTGC TATTTATGAAGCTATCAATAATGCAGGATTGGCTGTTGTGACGGCGCATCCTGTTCATGCAGAACTTCGTGGTGCCAGCC CAAAAACAGCAGCTAAAGATCCGATTAGTTTAGATGCAATCCTTGTGTGCAGGAAAAGGGAGTTTGCAATAGTAGATAAA ATGGAAATTAAAGATGTCTGCAGAGCTGTGGATACACTTGCGGGGAAATTTGAGAAAGCAGGAATGACTGTCTCCAATGG TGACAGGTTTGTTATTGGTGCAGCAGAAACAATGATTGCAAGAGCTACGGACGATCTCACTTTTGATCAAATGAAAAAGG TTTTAACTTCGGTATATTCAGCTGTGAGGGTATAG
Upstream 100 bases:
>100_bases AACCCGAATGCTGGTAAGGAGCATCATTTTACTGCTTATCGCTTGCTCAGTCAGTCAAACAAGCCTGTGACCTTGGCTTG TAAAGGGTAGTTGGCTGAAA
Downstream 100 bases:
>100_bases GTATGAAAAAATGAATGTTGGTCGTTTATTATGCGTGACTGTTATATATCAATTCCCTTGGTATGCAAATAAGGGATATT TAAATGGTCTTTATGTGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: DNA Methylase; DNA Methylase Containing A Zn-Ribbon Module; Adenine-Specific DNA Methylase Containing A Zn-Ribbon
Number of amino acids: Translated: 704; Mature: 704
Protein sequence:
>704_residues MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVFRAIVLGALSPPGKGIWDVFY EKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVSSFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDP HTGGIIPVLYYFWVKTVFTPTGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAKKRLEEENLPLPDSPVREGHN TNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQEQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPE RTPLENSVWGNKKSSGTFSTLFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSGEGEVQHKDPLVFSRQLSSVF SEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVVTAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDK MEIKDVCRAVDTLAGKFEKAGMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV
Sequences:
>Translated_704_residues MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVFRAIVLGALSPPGKGIWDVFY EKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVSSFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDP HTGGIIPVLYYFWVKTVFTPTGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAKKRLEEENLPLPDSPVREGHN TNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQEQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPE RTPLENSVWGNKKSSGTFSTLFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSGEGEVQHKDPLVFSRQLSSVF SEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVVTAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDK MEIKDVCRAVDTLAGKFEKAGMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV >Mature_704_residues MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVFRAIVLGALSPPGKGIWDVFY EKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVSSFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDP HTGGIIPVLYYFWVKTVFTPTGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAKKRLEEENLPLPDSPVREGHN TNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQEQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPE RTPLENSVWGNKKSSGTFSTLFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSGEGEVQHKDPLVFSRQLSSVF SEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVVTAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDK MEIKDVCRAVDTLAGKFEKAGMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV
Specific function: Unknown
COG id: COG1743
COG function: function code L; Adenine-specific DNA methylase containing a Zn-ribbon
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78930; Mature: 78930
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVF CCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH RAIVLGALSPPGKGIWDVFYEKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVS HHHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCHHCCCCCCHHH SFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDPHTGGIIPVLYYFWVKTVFTP HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC TGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP CCCCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAK CCCCCCCCCCCCEEEHHHHHHCCCCCCHHHHEEEEEEEECCCEEEECCCCCCHHHHHHHH KRLEEENLPLPDSPVREGHNTNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQ HHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHH EQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPERTPLENSVWGNKKSSGTFST HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH LFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCEE VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSG EEECCCCCCCCCHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EGEVQHKDPLVFSRQLSSVFSEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEE TAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDKMEIKDVCRAVDTLAGKFEKA EECCCHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV CCEECCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVF CCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH RAIVLGALSPPGKGIWDVFYEKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVS HHHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCHHCCCCCCHHH SFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDPHTGGIIPVLYYFWVKTVFTP HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC TGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP CCCCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAK CCCCCCCCCCCCEEEHHHHHHCCCCCCHHHHEEEEEEEECCCEEEECCCCCCHHHHHHHH KRLEEENLPLPDSPVREGHNTNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQ HHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHH EQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPERTPLENSVWGNKKSSGTFST HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH LFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCEE VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSG EEECCCCCCCCCHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EGEVQHKDPLVFSRQLSSVFSEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEE TAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDKMEIKDVCRAVDTLAGKFEKA EECCCHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV CCEECCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA