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The map label for this gene is csp [H]

Identifier: 110834773

GI number: 110834773

Start: 2189525

End: 2189755

Strand: Direct

Name: csp [H]

Synonym: ABO_1912

Alternate gene names: 110834773

Gene position: 2189525-2189755 (Clockwise)

Preceding gene: 110834771

Following gene: 110834774

Centisome position: 70.17

GC content: 56.28

Gene sequence:

>231_bases
ATGCCCTCCCTGCCCGGCAGCAATGGCCAGCAGCGCGGTGAAGTGAAGTGGTTCAACCCAAACAAGGGTTTTGGCTTCAT
TCTTACCGACAGCGGTGAAGAACTGTTTGTTCATTTCAAAGCGGTACAGAACGGCGGCCGCCGCAGTCTGCGCACCGGCA
CCAAGGTCCGCTTCGATACCCGCATGTCCGATCGCGGCGAACAGGCCGATAACGTCTATATCGAACAATAA

Upstream 100 bases:

>100_bases
TAATACCGTATTCACCCATCAAGCGTGGTTGTGGGTACCGGTGTTGGTCTATCTGCTGCCGTTGATTCCTTTCGGCAAGC
TGGTGCCGGCTAACCTACCC

Downstream 100 bases:

>100_bases
AACAACCTAAGTCGCATCATGCGGCACGCGCAGCAGGCTGCACTCAGCGGCGTGTTGCGCGCCGCCTGTTGCCTGAAGCG
GAATAACAATAATGACTCTG

Product: cold-shock domain-contain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MPSLPGSNGQQRGEVKWFNPNKGFGFILTDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRGEQADNVYIEQ

Sequences:

>Translated_76_residues
MPSLPGSNGQQRGEVKWFNPNKGFGFILTDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRGEQADNVYIEQ
>Mature_75_residues
PSLPGSNGQQRGEVKWFNPNKGFGFILTDSGEELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRGEQADNVYIEQ

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=50, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=46.969696969697, Blast_Score=61, Evalue=1e-11,
Organism=Escherichia coli, GI1787107, Length=63, Percent_Identity=41.2698412698413, Blast_Score=60, Evalue=3e-11,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=45.1612903225806, Blast_Score=59, Evalue=7e-11,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=45.1612903225806, Blast_Score=59, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8592; Mature: 8460

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLPGSNGQQRGEVKWFNPNKGFGFILTDSGEELFVHFKAVQNGGRRSLRTGTKVRFDT
CCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEC
RMSDRGEQADNVYIEQ
CCCCCCCCCCEEEEEC
>Mature Secondary Structure 
PSLPGSNGQQRGEVKWFNPNKGFGFILTDSGEELFVHFKAVQNGGRRSLRTGTKVRFDT
CCCCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEC
RMSDRGEQADNVYIEQ
CCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139925; 12566566 [H]