| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834705
Identifier: 110834705
GI number: 110834705
Start: 2112434
End: 2113630
Strand: Direct
Name: 110834705
Synonym: ABO_1844
Alternate gene names: NA
Gene position: 2112434-2113630 (Clockwise)
Preceding gene: 110834704
Following gene: 110834713
Centisome position: 67.7
GC content: 55.39
Gene sequence:
>1197_bases ATGAATGTGCAGCCCGCTAAATATGGCTTTGTTGCCGCTTTGGGCCTTTCGCAACTGGTATCTTGGGGCGTGCTGTATTA CAGCTTCCCCTTGATAGCAGAGGCGATGATTAACGACACAGGAATAAGCCGCAGTTCGATTTACGGTGCGGCCACTGCCG GCTTACTTCTCGCGGCAGCCATGGCTTATCCGGTTGGCACCCTGGTCGATCGTGGGCATGGCCGCAAGATTATGGTGGGG GCAACCTTCGCCGCATCACTAACCACGCTATTATGGTCCTATGCCGCAACGGCGCCCGCCTTTTATGCAGCCATCATTAC GCTGGCTGGGCTTCAAGCCACATTGTTGTATGAGCCCGCTTTTGCTGTGGTGGTTCGTCAATTGAACATTCAGCAGGCAC GCTCAGCCATTACCGCGATAACCCTTTGGGCAGGCTTTTCCAGCACCCTGTTCGTACCCTTGGTGCAGTCCATGCTGGAT GCATTAGGCTGGCGCGGCACCTTGCTGTCTCTTGCCGCCATTAACCTGGCCATCGCCGCACCACTTTATTACTGGGCCAT TCCGCCAGCCACAACAGCACGCAACGTCACACCACCCAAAACCGTCGCCGCAAATCAACCGTCCCTTTCCCCCATCTTGC GGCAGCCAACATTTTATCTTTTAAGCGCATCATTCTGTGCTTACATGGCCCTGTTTTCAGGTTTCACGTATCACCTCTAC CCCCTGCTGGTCGCGCGCTCTGATGACACCCAATCCGTGGTCCTGGCCATAGCGCTCATTGGTCCTGCCCAAGTCGGTGC AAGGGTACTGATACTACTTTTCAAAAAGATCACGATAAGACAACTGGGCCTGCTCACCGGTATCACCTTCCCCGTTGCCA TTGTGCTGCTGAAAGCTCCGCCGAGCACACTAACGCTGGTTGCGCTGTGTCTACTCTACGGTGGCGCCAATGGCATCTTC ACCATCGTTCGCGCAATGGCCGTTCCCGAGCTACTGTCCCGCCACCATTACGGGAGAATTAACGGCATCATGCTGATTCC CATGTCGCTGGCACGGGCCGTTGCACCTTGGGCAATTGCAGGCTACTGGACACATACGGGGAGCGCACAAGGAGCTATCA ATTTGATACTCGGATTGGCACTGCTAGTGCCGGTGTTATTTGGCTTGGCGATCAACACCCGCCGTCGGAACTGTTAG
Upstream 100 bases:
>100_bases TTCGCACCGGTTATAAGCAGGTTTTATCGGTGATCTCCGCGCTGGACAGCGAAGAGGAGCCAACTCCAGTTCAACCCTGC GCGGCACCCACGTGCCCGGG
Downstream 100 bases:
>100_bases CTATAAACCGTAACAAACCAACAGAAATGTAGAGAGAAGGAAGAGCTCTATCTGCCCTTTAGCAATTGGGCGCTAGACCG AACCTTCAGTGATGCGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Transporter; MFS Transporter; MFS Family Transporter; Facilitator Superfamily MFS_1 Domain-Containing Protein; Facilitator Superfamily Transporter Transmembrane Protein; Transmembrane Protein; MSF Transporter Transmembrane Protein; TRANSPORTER Facilitator Superfamily; MFS Permease; Transporter Facilitator Family Protein; Facilitator Family Transporter; Facilitator Superfamily Permease; Msf Transporter Protein
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MNVQPAKYGFVAALGLSQLVSWGVLYYSFPLIAEAMINDTGISRSSIYGAATAGLLLAAAMAYPVGTLVDRGHGRKIMVG ATFAASLTTLLWSYAATAPAFYAAIITLAGLQATLLYEPAFAVVVRQLNIQQARSAITAITLWAGFSSTLFVPLVQSMLD ALGWRGTLLSLAAINLAIAAPLYYWAIPPATTARNVTPPKTVAANQPSLSPILRQPTFYLLSASFCAYMALFSGFTYHLY PLLVARSDDTQSVVLAIALIGPAQVGARVLILLFKKITIRQLGLLTGITFPVAIVLLKAPPSTLTLVALCLLYGGANGIF TIVRAMAVPELLSRHHYGRINGIMLIPMSLARAVAPWAIAGYWTHTGSAQGAINLILGLALLVPVLFGLAINTRRRNC
Sequences:
>Translated_398_residues MNVQPAKYGFVAALGLSQLVSWGVLYYSFPLIAEAMINDTGISRSSIYGAATAGLLLAAAMAYPVGTLVDRGHGRKIMVG ATFAASLTTLLWSYAATAPAFYAAIITLAGLQATLLYEPAFAVVVRQLNIQQARSAITAITLWAGFSSTLFVPLVQSMLD ALGWRGTLLSLAAINLAIAAPLYYWAIPPATTARNVTPPKTVAANQPSLSPILRQPTFYLLSASFCAYMALFSGFTYHLY PLLVARSDDTQSVVLAIALIGPAQVGARVLILLFKKITIRQLGLLTGITFPVAIVLLKAPPSTLTLVALCLLYGGANGIF TIVRAMAVPELLSRHHYGRINGIMLIPMSLARAVAPWAIAGYWTHTGSAQGAINLILGLALLVPVLFGLAINTRRRNC >Mature_398_residues MNVQPAKYGFVAALGLSQLVSWGVLYYSFPLIAEAMINDTGISRSSIYGAATAGLLLAAAMAYPVGTLVDRGHGRKIMVG ATFAASLTTLLWSYAATAPAFYAAIITLAGLQATLLYEPAFAVVVRQLNIQQARSAITAITLWAGFSSTLFVPLVQSMLD ALGWRGTLLSLAAINLAIAAPLYYWAIPPATTARNVTPPKTVAANQPSLSPILRQPTFYLLSASFCAYMALFSGFTYHLY PLLVARSDDTQSVVLAIALIGPAQVGARVLILLFKKITIRQLGLLTGITFPVAIVLLKAPPSTLTLVALCLLYGGANGIF TIVRAMAVPELLSRHHYGRINGIMLIPMSLARAVAPWAIAGYWTHTGSAQGAINLILGLALLVPVLFGLAINTRRRNC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42306; Mature: 42306
Theoretical pI: Translated: 10.31; Mature: 10.31
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVQPAKYGFVAALGLSQLVSWGVLYYSFPLIAEAMINDTGISRSSIYGAATAGLLLAAA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH MAYPVGTLVDRGHGRKIMVGATFAASLTTLLWSYAATAPAFYAAIITLAGLQATLLYEPA HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECHH FAVVVRQLNIQQARSAITAITLWAGFSSTLFVPLVQSMLDALGWRGTLLSLAAINLAIAA HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH PLYYWAIPPATTARNVTPPKTVAANQPSLSPILRQPTFYLLSASFCAYMALFSGFTYHLY HHHEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCHHEEE PLLVARSDDTQSVVLAIALIGPAQVGARVLILLFKKITIRQLGLLTGITFPVAIVLLKAP EEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHCCCC PSTLTLVALCLLYGGANGIFTIVRAMAVPELLSRHHYGRINGIMLIPMSLARAVAPWAIA CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCHHHE GYWTHTGSAQGAINLILGLALLVPVLFGLAINTRRRNC EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNVQPAKYGFVAALGLSQLVSWGVLYYSFPLIAEAMINDTGISRSSIYGAATAGLLLAAA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH MAYPVGTLVDRGHGRKIMVGATFAASLTTLLWSYAATAPAFYAAIITLAGLQATLLYEPA HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECHH FAVVVRQLNIQQARSAITAITLWAGFSSTLFVPLVQSMLDALGWRGTLLSLAAINLAIAA HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH PLYYWAIPPATTARNVTPPKTVAANQPSLSPILRQPTFYLLSASFCAYMALFSGFTYHLY HHHEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCHHEEE PLLVARSDDTQSVVLAIALIGPAQVGARVLILLFKKITIRQLGLLTGITFPVAIVLLKAP EEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHCCCC PSTLTLVALCLLYGGANGIFTIVRAMAVPELLSRHHYGRINGIMLIPMSLARAVAPWAIA CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCHHHE GYWTHTGSAQGAINLILGLALLVPVLFGLAINTRRRNC EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA