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The map label for this gene is selU

Identifier: 110834581

GI number: 110834581

Start: 1958220

End: 1959308

Strand: Direct

Name: selU

Synonym: ABO_1720

Alternate gene names: 110834581

Gene position: 1958220-1959308 (Clockwise)

Preceding gene: 110834580

Following gene: 110834582

Centisome position: 62.76

GC content: 56.47

Gene sequence:

>1089_bases
ATGCGCGACGATACCTGTGATTACCTGTCCCTGTTCCTCAATGACACACCCTTGCTGGACGTGCGTGCCCCCGTGGAATT
TGCCAAAGGCGCCTTTCCTGGTACCACCAATCTCGCTCTGATCAACGATGAAGAACGCCACCGCATAGGCATCTGCTATA
AGCAGCATGGTCAACAGGCGGCGATTGATCTGGGCAACACGCTGGTTTGTGGCGAGGAGCGAGAGCGGCGCCTATACGCT
TGGCAGCAATGGTGGCAAGCCAATCCCAACGGCTACTTATATTGCTTTCGTGGCGGGCTGCGTAGCCAGACGACCCAGGC
GTGGCTGCGCGAAATCGGCATCGATGCCCCGCTAGTGACTGGTGGCTACAAAGCGCTGCGCCGTTTTCTGATCGATGAAA
TGGAAGCCTGCATCGCCAACCTACCGCTGGAGGTCCTGTGTGGCCGCACCGGCTGCGCCAAAACACGAGTCATTGAGCAA
CAACCCAACGCTATCGATCTGGAAGGCCTTGCCCACCATCGCGGTTCATCCTTTGGTCGTCGCCCAGGTGGCCAGCCCAG
CCAAATTGATTTCGAAAATAGCCTGTCCATTGCTCTGATCAAACAACGTGCCGCACAGCCTGTAAGCATTCTGGTGGAAG
ACGAAAGCAAACTGATCGGGCGCTGTCACCTGCCTTTTTCCCTCCAAGACCAGATCAAGTCGCAACCACGTATCATCATT
GAAGAATCGCTGGAGTCCCGTGTTCAGGTAACGCTGGAAGATTACGTCATTGGCCCACTGCAGGAATATGCCCGCTACTT
CGGTGAACACGACGCTCTCAAACAACTCGGTGACGAATTACTGGCGTCCATGGATCGCATTCGCCGCCGCCTGGGTGGCA
TTCGCCACCAGCAACTTCGTCAACAGCTTCAGGAAGCCTTGGCCGTGCAAGCAAACTGCGGCAATACCGAGCTGCACCGC
GAATGGATCCACAGCCTGCTCGCCGATTATTACGACCCCATGTACGACTACATGTTGTCGCGCCGGGCGGGCACTATCCT
GTTCCAGGGCAGCCGAGCTGAAGTCAGTGCTTTCCTTAACAGTCGCTGA

Upstream 100 bases:

>100_bases
CGTTGAAAAGGAAAACTGGCGACCACCCTCGGTTCCACATCCAATTTCCTCGCGTGTAGCGTGTAGCGTGTAGCGTGTAG
CTGGATTACACTCGCCAACC

Downstream 100 bases:

>100_bases
GCAATATCACCGGCAGGCCGCTATACTGCATAAGCGTTCCTTGCCGAATCCAACATTCCTTAAGCCTCCCTATTGAACGG
AGACAACGATGCGTTTGAAA

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MRDDTCDYLSLFLNDTPLLDVRAPVEFAKGAFPGTTNLALINDEERHRIGICYKQHGQQAAIDLGNTLVCGEERERRLYA
WQQWWQANPNGYLYCFRGGLRSQTTQAWLREIGIDAPLVTGGYKALRRFLIDEMEACIANLPLEVLCGRTGCAKTRVIEQ
QPNAIDLEGLAHHRGSSFGRRPGGQPSQIDFENSLSIALIKQRAAQPVSILVEDESKLIGRCHLPFSLQDQIKSQPRIII
EESLESRVQVTLEDYVIGPLQEYARYFGEHDALKQLGDELLASMDRIRRRLGGIRHQQLRQQLQEALAVQANCGNTELHR
EWIHSLLADYYDPMYDYMLSRRAGTILFQGSRAEVSAFLNSR

Sequences:

>Translated_362_residues
MRDDTCDYLSLFLNDTPLLDVRAPVEFAKGAFPGTTNLALINDEERHRIGICYKQHGQQAAIDLGNTLVCGEERERRLYA
WQQWWQANPNGYLYCFRGGLRSQTTQAWLREIGIDAPLVTGGYKALRRFLIDEMEACIANLPLEVLCGRTGCAKTRVIEQ
QPNAIDLEGLAHHRGSSFGRRPGGQPSQIDFENSLSIALIKQRAAQPVSILVEDESKLIGRCHLPFSLQDQIKSQPRIII
EESLESRVQVTLEDYVIGPLQEYARYFGEHDALKQLGDELLASMDRIRRRLGGIRHQQLRQQLQEALAVQANCGNTELHR
EWIHSLLADYYDPMYDYMLSRRAGTILFQGSRAEVSAFLNSR
>Mature_362_residues
MRDDTCDYLSLFLNDTPLLDVRAPVEFAKGAFPGTTNLALINDEERHRIGICYKQHGQQAAIDLGNTLVCGEERERRLYA
WQQWWQANPNGYLYCFRGGLRSQTTQAWLREIGIDAPLVTGGYKALRRFLIDEMEACIANLPLEVLCGRTGCAKTRVIEQ
QPNAIDLEGLAHHRGSSFGRRPGGQPSQIDFENSLSIALIKQRAAQPVSILVEDESKLIGRCHLPFSLQDQIKSQPRIII
EESLESRVQVTLEDYVIGPLQEYARYFGEHDALKQLGDELLASMDRIRRRLGGIRHQQLRQQLQEALAVQANCGNTELHR
EWIHSLLADYYDPMYDYMLSRRAGTILFQGSRAEVSAFLNSR

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain

Homologues:

Organism=Escherichia coli, GI1786712, Length=357, Percent_Identity=42.296918767507, Blast_Score=290, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SELU_ALCBS (Q0VNT0)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_693440.1
- ProteinModelPortal:   Q0VNT0
- SMR:   Q0VNT0
- STRING:   Q0VNT0
- GeneID:   4213142
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_1720
- NMPDR:   fig|393595.12.peg.1726
- eggNOG:   COG2603
- HOGENOM:   HBG452364
- OMA:   NLPLMND
- PhylomeDB:   Q0VNT0
- ProtClustDB:   PRK11784
- BioCyc:   ABOR393595:ABO_1720-MONOMER
- HAMAP:   MF_01622
- InterPro:   IPR001763
- InterPro:   IPR017582
- Gene3D:   G3DSA:3.40.250.10
- SMART:   SM00450
- TIGRFAMs:   TIGR03167

Pfam domain/function: SSF52821 Rhodanese-like

EC number: NA

Molecular weight: Translated: 41146; Mature: 41146

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50206 RHODANESE_3

Important sites: ACT_SITE 95-95

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDDTCDYLSLFLNDTPLLDVRAPVEFAKGAFPGTTNLALINDEERHRIGICYKQHGQQA
CCCCHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCCCEEEECCCCCCEEEEHHHHCCCEE
AIDLGNTLVCGEERERRLYAWQQWWQANPNGYLYCFRGGLRSQTTQAWLREIGIDAPLVT
EHCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEC
GGYKALRRFLIDEMEACIANLPLEVLCGRTGCAKTRVIEQQPNAIDLEGLAHHRGSSFGR
CHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCEECHHHHHHHCCCCCCC
RPGGQPSQIDFENSLSIALIKQRAAQPVSILVEDESKLIGRCHLPFSLQDQIKSQPRIII
CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHEEECCCCCHHHHHCCCCCEEE
EESLESRVQVTLEDYVIGPLQEYARYFGEHDALKQLGDELLASMDRIRRRLGGIRHQQLR
HHHHHHHHEEEHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
QQLQEALAVQANCGNTELHREWIHSLLADYYDPMYDYMLSRRAGTILFQGSRAEVSAFLN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC
SR
CC
>Mature Secondary Structure
MRDDTCDYLSLFLNDTPLLDVRAPVEFAKGAFPGTTNLALINDEERHRIGICYKQHGQQA
CCCCHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCCCEEEECCCCCCEEEEHHHHCCCEE
AIDLGNTLVCGEERERRLYAWQQWWQANPNGYLYCFRGGLRSQTTQAWLREIGIDAPLVT
EHCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEC
GGYKALRRFLIDEMEACIANLPLEVLCGRTGCAKTRVIEQQPNAIDLEGLAHHRGSSFGR
CHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCEECHHHHHHHCCCCCCC
RPGGQPSQIDFENSLSIALIKQRAAQPVSILVEDESKLIGRCHLPFSLQDQIKSQPRIII
CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHEEECCCCCHHHHHCCCCCEEE
EESLESRVQVTLEDYVIGPLQEYARYFGEHDALKQLGDELLASMDRIRRRLGGIRHQQLR
HHHHHHHHEEEHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
QQLQEALAVQANCGNTELHREWIHSLLADYYDPMYDYMLSRRAGTILFQGSRAEVSAFLN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC
SR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA