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The map label for this gene is ygfZ [C]

Identifier: 110834505

GI number: 110834505

Start: 1879006

End: 1879953

Strand: Direct

Name: ygfZ [C]

Synonym: ABO_1644

Alternate gene names: 110834505

Gene position: 1879006-1879953 (Clockwise)

Preceding gene: 110834502

Following gene: 110834513

Centisome position: 60.22

GC content: 59.18

Gene sequence:

>948_bases
ATGAGCTGGTCCGAGTTTATTGCCGCCCAACCCCTGGCAGATCACGCCCCCACGGATAACGCCCCCACATTAAGCCACTG
CGATCACTTGGCTATTATCCGCGCTCATGGCGAGGAAGCCGGCCATTACCTGCAAGGTCAGCTGTCCTGCGACCTGCGCG
AAGTGGATAACGGAGGGCACCTCACCGGCATGCATCTGAGCCTGAAAGGCCGTGGCCTGGTCAGCGTACGCATTGTTCGC
GACGGTAACGACTACCTGATGCTCTGCCCAGCCGGGCAAAGCGAAGCGGTAATCAAATCATTAATGAAATACCGCCTGCG
CGCCAAAGTGGAATTTCAAGTGGACAACCAGGCCGTAATTCTGGGGCTTTCAGGCGCATTGCCCGGCGCCCTTCCCCAAC
CTGGGCAAAGCACCCGCAACGATCAAGGCCTGTGGCTACGCTACCCCAACACCGATCACGCACTGCTGATTACCCACACA
GAGCAAGCGGAAGCCGTATGGGCGGCACAGGCTCAGGAACGCACAGCCCTCAACGGCAACGGCTGGCGGCTGGCCGACAT
CGACGCCGGCGAAGGCATGGTCTACCCGGGCGCAGAAGATCTATTCCTGCCTCAGGTTCTTAACTACGACGTCACCGCCG
GGGTGAACTTTAAGAAAGGCTGCTACACAGGCCAGGAAGTAGTTGCACGCATGCACTTCAAGGGCAAGCTCAAGCAACGC
ATGCAACGGGTCGATTACACCGCCGATATGGATCTGACACCCGGTGAAACGCTACGCGACAGCAACGGCAAAGCCGCCGG
TGAAGTGGTCAGCAGTGCCCGCACCCCTGCCGGGCACAGTGCCCTCGTGGTACTGCGCCGCAACACCGATGGTGTATTGT
TCAAAGACGCTGAGCCGCTCAACAGCCAGCTCGGCACTCTACCCTATACCTTGCCCTGGAAAGATTAA

Upstream 100 bases:

>100_bases
ACAGCTTTCAGGCTGTGCGCGCATTATCTATCATGGCTGATGATTTCTCGACTCCCCCGGAGTCCCACGCCACGTTACAC
GTTAGGATAACAGGAGCCCC

Downstream 100 bases:

>100_bases
GCCCCACGGAGCCCACACGCGCCCGTAGGCCGAATTAGCCCCAAGTCTTTCCACATAAAAAAAGGCGCCGAAGCGCCTTT
TTTTATGTGTCTTTCTAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSWSEFIAAQPLADHAPTDNAPTLSHCDHLAIIRAHGEEAGHYLQGQLSCDLREVDNGGHLTGMHLSLKGRGLVSVRIVR
DGNDYLMLCPAGQSEAVIKSLMKYRLRAKVEFQVDNQAVILGLSGALPGALPQPGQSTRNDQGLWLRYPNTDHALLITHT
EQAEAVWAAQAQERTALNGNGWRLADIDAGEGMVYPGAEDLFLPQVLNYDVTAGVNFKKGCYTGQEVVARMHFKGKLKQR
MQRVDYTADMDLTPGETLRDSNGKAAGEVVSSARTPAGHSALVVLRRNTDGVLFKDAEPLNSQLGTLPYTLPWKD

Sequences:

>Translated_315_residues
MSWSEFIAAQPLADHAPTDNAPTLSHCDHLAIIRAHGEEAGHYLQGQLSCDLREVDNGGHLTGMHLSLKGRGLVSVRIVR
DGNDYLMLCPAGQSEAVIKSLMKYRLRAKVEFQVDNQAVILGLSGALPGALPQPGQSTRNDQGLWLRYPNTDHALLITHT
EQAEAVWAAQAQERTALNGNGWRLADIDAGEGMVYPGAEDLFLPQVLNYDVTAGVNFKKGCYTGQEVVARMHFKGKLKQR
MQRVDYTADMDLTPGETLRDSNGKAAGEVVSSARTPAGHSALVVLRRNTDGVLFKDAEPLNSQLGTLPYTLPWKD
>Mature_314_residues
SWSEFIAAQPLADHAPTDNAPTLSHCDHLAIIRAHGEEAGHYLQGQLSCDLREVDNGGHLTGMHLSLKGRGLVSVRIVRD
GNDYLMLCPAGQSEAVIKSLMKYRLRAKVEFQVDNQAVILGLSGALPGALPQPGQSTRNDQGLWLRYPNTDHALLITHTE
QAEAVWAAQAQERTALNGNGWRLADIDAGEGMVYPGAEDLFLPQVLNYDVTAGVNFKKGCYTGQEVVARMHFKGKLKQRM
QRVDYTADMDLTPGETLRDSNGKAAGEVVSSARTPAGHSALVVLRRNTDGVLFKDAEPLNSQLGTLPYTLPWKD

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=330, Percent_Identity=26.6666666666667, Blast_Score=107, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24645123, Length=280, Percent_Identity=26.4285714285714, Blast_Score=68, Evalue=8e-12,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 34349; Mature: 34218

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWSEFIAAQPLADHAPTDNAPTLSHCDHLAIIRAHGEEAGHYLQGQLSCDLREVDNGGH
CCHHHHHHCCCCCCCCCCCCCCCHHCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCCCE
LTGMHLSLKGRGLVSVRIVRDGNDYLMLCPAGQSEAVIKSLMKYRLRAKVEFQVDNQAVI
EEEEEEEECCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHEEEEEEECCEEEE
LGLSGALPGALPQPGQSTRNDQGLWLRYPNTDHALLITHTEQAEAVWAAQAQERTALNGN
EEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHHEEECCC
GWRLADIDAGEGMVYPGAEDLFLPQVLNYDVTAGVNFKKGCYTGQEVVARMHFKGKLKQR
CEEEEEECCCCCEECCCCCCCCCHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
MQRVDYTADMDLTPGETLRDSNGKAAGEVVSSARTPAGHSALVVLRRNTDGVLFKDAEPL
HHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEEEECCCCH
NSQLGTLPYTLPWKD
HHHHCCCCEEECCCC
>Mature Secondary Structure 
SWSEFIAAQPLADHAPTDNAPTLSHCDHLAIIRAHGEEAGHYLQGQLSCDLREVDNGGH
CHHHHHHCCCCCCCCCCCCCCCHHCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCCCE
LTGMHLSLKGRGLVSVRIVRDGNDYLMLCPAGQSEAVIKSLMKYRLRAKVEFQVDNQAVI
EEEEEEEECCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHEEEEEEECCEEEE
LGLSGALPGALPQPGQSTRNDQGLWLRYPNTDHALLITHTEQAEAVWAAQAQERTALNGN
EEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHHEEECCC
GWRLADIDAGEGMVYPGAEDLFLPQVLNYDVTAGVNFKKGCYTGQEVVARMHFKGKLKQR
CEEEEEECCCCCEECCCCCCCCCHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
MQRVDYTADMDLTPGETLRDSNGKAAGEVVSSARTPAGHSALVVLRRNTDGVLFKDAEPL
HHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEEEECCCCH
NSQLGTLPYTLPWKD
HHHHCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA