| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834411
Identifier: 110834411
GI number: 110834411
Start: 1771877
End: 1773202
Strand: Direct
Name: 110834411
Synonym: ABO_1550
Alternate gene names: NA
Gene position: 1771877-1773202 (Clockwise)
Preceding gene: 110834410
Following gene: 110834412
Centisome position: 56.79
GC content: 59.05
Gene sequence:
>1326_bases ATGGGTAAAACCGCCCGGCTGCGCCGCGCCTTTCCCTGGCTACTGGCTGCCCTGTTGCTTGCCATGGTCTCTGGCTACTA CGCCCTCACTGAGCCAGTCACCTACATGAAACGGGTGGCGCCGGACAGCAGCATTACCCGCAACCCCTATAGCGCCGCCC AGCAATGGCTGGCACAACGGGGCCAGCCCTCTAAACGCATTCTCAGTGCCGCCGCCCTATTCCCATTGCCAGACACCCGC ACCACCCTCGTGATCGATAAACACCGCGGCATGCTCACCTCTAACCAAGTTAACGCTCTGCTTGAGTGGGTGCAGGACGG CGGCAAGCTGGTAGTGGAGGGGCGCCCTCTTCCTGGCATACTCGACACATCTGACGCTAGCGCCAGCGACTGGCAAGATA ACGATCCGTTGTTATTCGCGCTAGGCATCACCGTGTGGGACTCTCCGGTGCCCAGTGACGCTGGGCAAGAAGATGCAATA CGCGATCTGCTCATGGCCCTGCCGACTTTTGTCGACAGCCCACTGCAATATTGTCTGCATAGCGACAACGAAGCACTCCG CGAAGATTGCGCACGGCTAGCCTGTGATGCCCCACCAGAACCCACACCGCTGACCTTGCATGTGAGTGACAACGAGCCAG ATCGCCGGGTGCAATTATTCAGTGACTATGTGATTTGGCACGACAGCTGGGACGAGGAAGAAGGCAACGCCCCGCACCTG GAATGGCCGGTGGAAATCACCGGCTACGCAGATAATGATTACGGCAGCCAGCTGGTACAACTGAGCCTTGGCAGTGGGCA AATTTCCGTGCTAACCGATTTGAGCCTGTGGTCCAGCGAGCGGCTGCTCTACTTCGATCATGCTTGGCTGCTGGCCTGGC TTACCGGCGCAGAACCCGTGTGGTTTGTCCGCTCGGTGGCCATGCCGCCCCTGGCCCAGTGGCTGTGGCTAAAAGCCCCG GCGCTGGCGTTTGCCCTGCTAATCTTGCTGGTTCTGTGGCTATGGCATCGCATTCCTCGCCAGGGGCCACGGCAGCAAGC CCGCGAAGAAAGCCGCCGTGATTACCTGAAACACCTGCACGCCAGCGGTTACTTTCAGTGGCGCACCAACCAACAAATGG CCCTGCTGGCAGAGCTGCGCAAACAAGCAGAACAACAGCTGCTCCGTTTCCATCACCAACGCAATAAGGCTCTGGCGCTG GCGGCAAAAGCGCTGTCGGTGCCAGTAAAAGAACTGGACGCGGCACTACAGAGCCAAGCAGACACCCGAGACCGGTTCAC GCAGCAGGTCTCATTATTACAATCGCTGAAAAATTGCCGTCACTGA
Upstream 100 bases:
>100_bases GCTTGGATCAGCACCGCCTGGGCCCACCGTCCGGTCAGTGACGAACAGGTCCGCACGCTGGCACAGCACTGGCAGCAAAT GGATCCGCTGGAGGCAGACC
Downstream 100 bases:
>100_bases TGCCGGTTCCAGCGGTACAGTGGCGCGGACAACCACGCCAACGTCAGTTAAAACGTAAAAGGACAACAATATGAGCCAAC CCGCCACCCTCGCCGATGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MGKTARLRRAFPWLLAALLLAMVSGYYALTEPVTYMKRVAPDSSITRNPYSAAQQWLAQRGQPSKRILSAAALFPLPDTR TTLVIDKHRGMLTSNQVNALLEWVQDGGKLVVEGRPLPGILDTSDASASDWQDNDPLLFALGITVWDSPVPSDAGQEDAI RDLLMALPTFVDSPLQYCLHSDNEALREDCARLACDAPPEPTPLTLHVSDNEPDRRVQLFSDYVIWHDSWDEEEGNAPHL EWPVEITGYADNDYGSQLVQLSLGSGQISVLTDLSLWSSERLLYFDHAWLLAWLTGAEPVWFVRSVAMPPLAQWLWLKAP ALAFALLILLVLWLWHRIPRQGPRQQAREESRRDYLKHLHASGYFQWRTNQQMALLAELRKQAEQQLLRFHHQRNKALAL AAKALSVPVKELDAALQSQADTRDRFTQQVSLLQSLKNCRH
Sequences:
>Translated_441_residues MGKTARLRRAFPWLLAALLLAMVSGYYALTEPVTYMKRVAPDSSITRNPYSAAQQWLAQRGQPSKRILSAAALFPLPDTR TTLVIDKHRGMLTSNQVNALLEWVQDGGKLVVEGRPLPGILDTSDASASDWQDNDPLLFALGITVWDSPVPSDAGQEDAI RDLLMALPTFVDSPLQYCLHSDNEALREDCARLACDAPPEPTPLTLHVSDNEPDRRVQLFSDYVIWHDSWDEEEGNAPHL EWPVEITGYADNDYGSQLVQLSLGSGQISVLTDLSLWSSERLLYFDHAWLLAWLTGAEPVWFVRSVAMPPLAQWLWLKAP ALAFALLILLVLWLWHRIPRQGPRQQAREESRRDYLKHLHASGYFQWRTNQQMALLAELRKQAEQQLLRFHHQRNKALAL AAKALSVPVKELDAALQSQADTRDRFTQQVSLLQSLKNCRH >Mature_440_residues GKTARLRRAFPWLLAALLLAMVSGYYALTEPVTYMKRVAPDSSITRNPYSAAQQWLAQRGQPSKRILSAAALFPLPDTRT TLVIDKHRGMLTSNQVNALLEWVQDGGKLVVEGRPLPGILDTSDASASDWQDNDPLLFALGITVWDSPVPSDAGQEDAIR DLLMALPTFVDSPLQYCLHSDNEALREDCARLACDAPPEPTPLTLHVSDNEPDRRVQLFSDYVIWHDSWDEEEGNAPHLE WPVEITGYADNDYGSQLVQLSLGSGQISVLTDLSLWSSERLLYFDHAWLLAWLTGAEPVWFVRSVAMPPLAQWLWLKAPA LAFALLILLVLWLWHRIPRQGPRQQAREESRRDYLKHLHASGYFQWRTNQQMALLAELRKQAEQQLLRFHHQRNKALALA AKALSVPVKELDAALQSQADTRDRFTQQVSLLQSLKNCRH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49901; Mature: 49770
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKTARLRRAFPWLLAALLLAMVSGYYALTEPVTYMKRVAPDSSITRNPYSAAQQWLAQR CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC GQPSKRILSAAALFPLPDTRTTLVIDKHRGMLTSNQVNALLEWVQDGGKLVVEGRPLPGI CCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC LDTSDASASDWQDNDPLLFALGITVWDSPVPSDAGQEDAIRDLLMALPTFVDSPLQYCLH CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHC SDNEALREDCARLACDAPPEPTPLTLHVSDNEPDRRVQLFSDYVIWHDSWDEEEGNAPHL CCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCEEEECCCCCCCCCCCCCE EWPVEITGYADNDYGSQLVQLSLGSGQISVLTDLSLWSSERLLYFDHAWLLAWLTGAEPV ECCEEEEECCCCCCCCCEEEEECCCCCEEEEEEHHHCCCCCEEEEHHHHHHHHHCCCCHH WFVRSVAMPPLAQWLWLKAPALAFALLILLVLWLWHRIPRQGPRQQAREESRRDYLKHLH HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH ASGYFQWRTNQQMALLAELRKQAEQQLLRFHHQRNKALALAAKALSVPVKELDAALQSQA HCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCC DTRDRFTQQVSLLQSLKNCRH HHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GKTARLRRAFPWLLAALLLAMVSGYYALTEPVTYMKRVAPDSSITRNPYSAAQQWLAQR CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC GQPSKRILSAAALFPLPDTRTTLVIDKHRGMLTSNQVNALLEWVQDGGKLVVEGRPLPGI CCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC LDTSDASASDWQDNDPLLFALGITVWDSPVPSDAGQEDAIRDLLMALPTFVDSPLQYCLH CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHC SDNEALREDCARLACDAPPEPTPLTLHVSDNEPDRRVQLFSDYVIWHDSWDEEEGNAPHL CCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCEEEECCCCCCCCCCCCCE EWPVEITGYADNDYGSQLVQLSLGSGQISVLTDLSLWSSERLLYFDHAWLLAWLTGAEPV ECCEEEEECCCCCCCCCEEEEECCCCCEEEEEEHHHCCCCCEEEEHHHHHHHHHCCCCHH WFVRSVAMPPLAQWLWLKAPALAFALLILLVLWLWHRIPRQGPRQQAREESRRDYLKHLH HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH ASGYFQWRTNQQMALLAELRKQAEQQLLRFHHQRNKALALAAKALSVPVKELDAALQSQA HCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCC DTRDRFTQQVSLLQSLKNCRH HHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA