| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110834409
Identifier: 110834409
GI number: 110834409
Start: 1769409
End: 1770392
Strand: Direct
Name: 110834409
Synonym: ABO_1548
Alternate gene names: NA
Gene position: 1769409-1770392 (Clockwise)
Preceding gene: 110834408
Following gene: 110834410
Centisome position: 56.71
GC content: 58.43
Gene sequence:
>984_bases ATGAAACAGGCCCGCTTTGAACAACAATATCGTTCGCAATGGCAGGCACTGGAGAACCAGCTGGAGCAGCTTGAATCACT GCACGTAAGCAAGAAGAACACGCTGCCCCTGAATACCTTCGTTACCGACTACCGCAAGCTTTGCCATCAACTGGCCCTAG CCCGCGAAAGGGGCTACAGCGTTCAGCTGCAACAGTTCCTCAACAACCTGATGCTCCGCGCCCATCGTCAACTGTATCGC TACAACCCCTCACTAGCGGATCGTATCGGTACCTTCATCGCCAGCGGCTTCCCCCAAGCAGTCCGCCGCCAGTGGCGCTG GCATCTGGTCAGCGCCCTGACCTTCGTGCTGTCTATGGCGTTGGTATGGGCACTGGTGCATCAACAACCAGAAATGATCT ATTCTGTGGTGGACGAAGCCAGCATTACCAGCCTGGAAAGCATGTACCAGCCGGATAACCAGGCGGGCATGAAGAGCGAG CGCAGCGGCGATGACGATGTAATGATGTTCGGCCATTATATCCAGAACAATATCGGCATCGCCTTCCGTACCTTCGCCAG CGGCTTGCTGTTAGGCGTAGGCGCGCTGGTGGTGATGCTGTTCAACGGCAGCTTCTTTGGCGCCGCCGCCGGGCACTTAA TCAACGTGGGTGCCCAAGAACCCTTCTTCACCTTTGTGATTGCCCACGGCGCCCCAGAGCTTACCGCCATTGTGCTAGCC GGTGGCGCGGGACTACGGCTTGGCTGGGCCATTATTGCTCCCGGCCCCTGGTCGCGGTTGGACGCCCTGCGCCTGGCGGC CCGGGATGCGCTGCCCACCATGTACGGAGTGTTTGCTCTGTTACTGCTGGCGGCCTTTATTGAAGCGTTCTGGTCACCAC GGGACCTGGCGGCGGCTATCAAATACAGCGTGGGCGCAGCCTGCTGGGTCCTTTTGTATCTGTATCTTTTCTTCGGGGGG CGGGATGGAACTCGAGAAGGCTAG
Upstream 100 bases:
>100_bases GCCAGCAAGAGCTGGCATTGCTGGTTTACCCTGAATTGACACCGGCCCAAGCATTACAACGCCTAAAGGCCGTCAGCCGC TATCTGGTGGAGGGCCCAGC
Downstream 100 bases:
>100_bases CGCTCGTCTAGCGCCGCGCACCCCCTGGCAGGCAACAGATCTGGGCACGCAGTTCTACCGCCATTGGGCCGGGCCCATTA CCGCTGTGTGGCTGCTATTT
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MKQARFEQQYRSQWQALENQLEQLESLHVSKKNTLPLNTFVTDYRKLCHQLALARERGYSVQLQQFLNNLMLRAHRQLYR YNPSLADRIGTFIASGFPQAVRRQWRWHLVSALTFVLSMALVWALVHQQPEMIYSVVDEASITSLESMYQPDNQAGMKSE RSGDDDVMMFGHYIQNNIGIAFRTFASGLLLGVGALVVMLFNGSFFGAAAGHLINVGAQEPFFTFVIAHGAPELTAIVLA GGAGLRLGWAIIAPGPWSRLDALRLAARDALPTMYGVFALLLLAAFIEAFWSPRDLAAAIKYSVGAACWVLLYLYLFFGG RDGTREG
Sequences:
>Translated_327_residues MKQARFEQQYRSQWQALENQLEQLESLHVSKKNTLPLNTFVTDYRKLCHQLALARERGYSVQLQQFLNNLMLRAHRQLYR YNPSLADRIGTFIASGFPQAVRRQWRWHLVSALTFVLSMALVWALVHQQPEMIYSVVDEASITSLESMYQPDNQAGMKSE RSGDDDVMMFGHYIQNNIGIAFRTFASGLLLGVGALVVMLFNGSFFGAAAGHLINVGAQEPFFTFVIAHGAPELTAIVLA GGAGLRLGWAIIAPGPWSRLDALRLAARDALPTMYGVFALLLLAAFIEAFWSPRDLAAAIKYSVGAACWVLLYLYLFFGG RDGTREG >Mature_327_residues MKQARFEQQYRSQWQALENQLEQLESLHVSKKNTLPLNTFVTDYRKLCHQLALARERGYSVQLQQFLNNLMLRAHRQLYR YNPSLADRIGTFIASGFPQAVRRQWRWHLVSALTFVLSMALVWALVHQQPEMIYSVVDEASITSLESMYQPDNQAGMKSE RSGDDDVMMFGHYIQNNIGIAFRTFASGLLLGVGALVVMLFNGSFFGAAAGHLINVGAQEPFFTFVIAHGAPELTAIVLA GGAGLRLGWAIIAPGPWSRLDALRLAARDALPTMYGVFALLLLAAFIEAFWSPRDLAAAIKYSVGAACWVLLYLYLFFGG RDGTREG
Specific function: Unknown
COG id: COG1300
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36544; Mature: 36544
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQARFEQQYRSQWQALENQLEQLESLHVSKKNTLPLNTFVTDYRKLCHQLALARERGYS CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC VQLQQFLNNLMLRAHRQLYRYNPSLADRIGTFIASGFPQAVRRQWRWHLVSALTFVLSMA HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LVWALVHQQPEMIYSVVDEASITSLESMYQPDNQAGMKSERSGDDDVMMFGHYIQNNIGI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCH AFRTFASGLLLGVGALVVMLFNGSFFGAAAGHLINVGAQEPFFTFVIAHGAPELTAIVLA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCEEEEEECCCCCCEEEEEE GGAGLRLGWAIIAPGPWSRLDALRLAARDALPTMYGVFALLLLAAFIEAFWSPRDLAAAI CCCCCEECEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH KYSVGAACWVLLYLYLFFGGRDGTREG HHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKQARFEQQYRSQWQALENQLEQLESLHVSKKNTLPLNTFVTDYRKLCHQLALARERGYS CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC VQLQQFLNNLMLRAHRQLYRYNPSLADRIGTFIASGFPQAVRRQWRWHLVSALTFVLSMA HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LVWALVHQQPEMIYSVVDEASITSLESMYQPDNQAGMKSERSGDDDVMMFGHYIQNNIGI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCH AFRTFASGLLLGVGALVVMLFNGSFFGAAAGHLINVGAQEPFFTFVIAHGAPELTAIVLA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCEEEEEECCCCCCEEEEEE GGAGLRLGWAIIAPGPWSRLDALRLAARDALPTMYGVFALLLLAAFIEAFWSPRDLAAAI CCCCCEECEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH KYSVGAACWVLLYLYLFFGGRDGTREG HHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA