Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 110834390

GI number: 110834390

Start: 1750332

End: 1751483

Strand: Direct

Name: yfdE [H]

Synonym: ABO_1529

Alternate gene names: 110834390

Gene position: 1750332-1751483 (Clockwise)

Preceding gene: 110834389

Following gene: 110834391

Centisome position: 56.1

GC content: 58.85

Gene sequence:

>1152_bases
ATGAACATTATGACAGGCCCTCTCCACGGACTGACTTTCATCGAACTGGCCGGCATTGGCCCCGGCCCCTTCTGCGGCAT
GATGCTGGCCGACATGGGCGCCACCGTCATCCGCATCGACCGTCCCGGCGGCAATCCTCACTCCGCTATTGGCCACACCG
TCCTTTTTCGTAATCGCCAAAATCTAGCCGTAGACTTGAAAAGCCCCGAAGGCATCGAAACCGTACTCAAACTATGTGAG
ACCGCCGATGGCCTGTTCGAAGGCTTCCGCCCCGGTGTCACTGAGCGCCTGGGAGTAGGACCGGAACAATGCCTAGCGCG
CAACCCGAAGCTGGTCTACGGCCGCATGACTGGCTGGGGCCAAACCGGCCCCCTGGCCCAGGCCGCCGGCCACGACATGA
ACTACATCTCCCTGTCCGGCGCCCTGCATGCCATGGGCCGTGAAGGCGAAAAGCCCGCCATCCCGCTCAACTTGGTAGGC
GATTTTGGCGGCGGCGGTATGATGCTAGCCTTCGGCATGGTCTGCGCTGTACTGGAAGCACAGCGTAGCGGTAAAGGTCA
GGTAGTGGATTCATCCATGGTGGAAGGCTCTGCCGCCCTCATGGCCATGTTCTATGGACTCAAATCCCAGGGCATGTTTA
CCGACAATCGCGGCACCCACATGCTCGATTCTGGCGCCCATTTCTATGAAGTGTATGAAACCGCCGACGGTAAGTATGTT
TCCATCGGCAGTATCGAGCCGCAGTTCTATGCGCAACTATGCCAGCTTGCTGAGCTGCCCCCCGAAGATTTTGGCCACCA
GATCAATCCTCCCAAGTGGCCAGAAATGAAACAAAAGCTCGCCGCTATCATCAAGCAAAAGACCCGAGACGAATGGTCCG
CCCTCATGGAAGGCACCGATGTGTGTTTTGCGCCGGTACTCAGCCTTGAAGAAGCGCCCTCGCATCCGCATAACGTGGCT
AGAGAATCGTTTGTTACCGTCAACGGCGCCGCACAACCGGCACCGACCCCGCGCTTCTCACGCACCGCTGCTGGCAAGGT
CAAACCAGCCTCCACCGCTGGGGCCGACAGCCGCGCGGTATTGAGCCAAGCCGGTTTCAGTGACAGTGACATTGACCGCT
TGATTGCTAGTGGTGCGGTTAAGCAGGACTGA

Upstream 100 bases:

>100_bases
CCAATGCTCGGCCCTGCGTCGCACCTTGCGCGAACAAGCTCTTGTTCCCTGATTGACCCACGTCTGTCAGGGAACGGTAA
AACGGACTCTGACAACGGAA

Downstream 100 bases:

>100_bases
TCCCTGTCGCCGCTCCTCTAGTTGCACTGATAGTCGCACTGATAGCATGCCAGCCGGTCCACAAGCCCGGCTGGCGTGAC
ACTCCCTACTGGAGGGACCA

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MNIMTGPLHGLTFIELAGIGPGPFCGMMLADMGATVIRIDRPGGNPHSAIGHTVLFRNRQNLAVDLKSPEGIETVLKLCE
TADGLFEGFRPGVTERLGVGPEQCLARNPKLVYGRMTGWGQTGPLAQAAGHDMNYISLSGALHAMGREGEKPAIPLNLVG
DFGGGGMMLAFGMVCAVLEAQRSGKGQVVDSSMVEGSAALMAMFYGLKSQGMFTDNRGTHMLDSGAHFYEVYETADGKYV
SIGSIEPQFYAQLCQLAELPPEDFGHQINPPKWPEMKQKLAAIIKQKTRDEWSALMEGTDVCFAPVLSLEEAPSHPHNVA
RESFVTVNGAAQPAPTPRFSRTAAGKVKPASTAGADSRAVLSQAGFSDSDIDRLIASGAVKQD

Sequences:

>Translated_383_residues
MNIMTGPLHGLTFIELAGIGPGPFCGMMLADMGATVIRIDRPGGNPHSAIGHTVLFRNRQNLAVDLKSPEGIETVLKLCE
TADGLFEGFRPGVTERLGVGPEQCLARNPKLVYGRMTGWGQTGPLAQAAGHDMNYISLSGALHAMGREGEKPAIPLNLVG
DFGGGGMMLAFGMVCAVLEAQRSGKGQVVDSSMVEGSAALMAMFYGLKSQGMFTDNRGTHMLDSGAHFYEVYETADGKYV
SIGSIEPQFYAQLCQLAELPPEDFGHQINPPKWPEMKQKLAAIIKQKTRDEWSALMEGTDVCFAPVLSLEEAPSHPHNVA
RESFVTVNGAAQPAPTPRFSRTAAGKVKPASTAGADSRAVLSQAGFSDSDIDRLIASGAVKQD
>Mature_383_residues
MNIMTGPLHGLTFIELAGIGPGPFCGMMLADMGATVIRIDRPGGNPHSAIGHTVLFRNRQNLAVDLKSPEGIETVLKLCE
TADGLFEGFRPGVTERLGVGPEQCLARNPKLVYGRMTGWGQTGPLAQAAGHDMNYISLSGALHAMGREGEKPAIPLNLVG
DFGGGGMMLAFGMVCAVLEAQRSGKGQVVDSSMVEGSAALMAMFYGLKSQGMFTDNRGTHMLDSGAHFYEVYETADGKYV
SIGSIEPQFYAQLCQLAELPPEDFGHQINPPKWPEMKQKLAAIIKQKTRDEWSALMEGTDVCFAPVLSLEEAPSHPHNVA
RESFVTVNGAAQPAPTPRFSRTAAGKVKPASTAGADSRAVLSQAGFSDSDIDRLIASGAVKQD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=381, Percent_Identity=42.7821522309711, Blast_Score=330, Evalue=1e-90,
Organism=Homo sapiens, GI266456254, Length=378, Percent_Identity=42.0634920634921, Blast_Score=327, Evalue=1e-89,
Organism=Homo sapiens, GI266458393, Length=290, Percent_Identity=42.7586206896552, Blast_Score=256, Evalue=3e-68,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=47.1774193548387, Blast_Score=253, Evalue=2e-67,
Organism=Homo sapiens, GI300863128, Length=405, Percent_Identity=26.9135802469136, Blast_Score=155, Evalue=8e-38,
Organism=Homo sapiens, GI300863124, Length=431, Percent_Identity=25.2900232018561, Blast_Score=149, Evalue=3e-36,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=45.6521739130435, Blast_Score=138, Evalue=8e-33,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=45.6521739130435, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI13376042, Length=431, Percent_Identity=23.4338747099768, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI300863126, Length=153, Percent_Identity=34.640522875817, Blast_Score=100, Evalue=3e-21,
Organism=Escherichia coli, GI87082093, Length=375, Percent_Identity=27.2, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786222, Length=407, Percent_Identity=28.2555282555283, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=25.8373205741627, Blast_Score=98, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=335, Percent_Identity=38.2089552238806, Blast_Score=223, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI115535051, Length=342, Percent_Identity=36.8421052631579, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24585488, Length=353, Percent_Identity=44.7592067988669, Blast_Score=303, Evalue=2e-82,
Organism=Drosophila melanogaster, GI24648431, Length=347, Percent_Identity=28.5302593659942, Blast_Score=128, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40722; Mature: 40722

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIMTGPLHGLTFIELAGIGPGPFCGMMLADMGATVIRIDRPGGNPHSAIGHTVLFRNRQ
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHCCEEEEECCC
NLAVDLKSPEGIETVLKLCETADGLFEGFRPGVTERLGVGPEQCLARNPKLVYGRMTGWG
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCEEEEECCCCC
QTGPLAQAAGHDMNYISLSGALHAMGREGEKPAIPLNLVGDFGGGGMMLAFGMVCAVLEA
CCCCHHHHCCCCCCEEEECHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
QRSGKGQVVDSSMVEGSAALMAMFYGLKSQGMFTDNRGTHMLDSGAHFYEVYETADGKYV
HHCCCCCEECHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEEEEEECCCCCEE
SIGSIEPQFYAQLCQLAELPPEDFGHQINPPKWPEMKQKLAAIIKQKTRDEWSALMEGTD
EECCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VCFAPVLSLEEAPSHPHNVARESFVTVNGAAQPAPTPRFSRTAAGKVKPASTAGADSRAV
HHHHHHHHHHHCCCCCHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LSQAGFSDSDIDRLIASGAVKQD
HHHCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNIMTGPLHGLTFIELAGIGPGPFCGMMLADMGATVIRIDRPGGNPHSAIGHTVLFRNRQ
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHCCEEEEECCC
NLAVDLKSPEGIETVLKLCETADGLFEGFRPGVTERLGVGPEQCLARNPKLVYGRMTGWG
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCEEEEECCCCC
QTGPLAQAAGHDMNYISLSGALHAMGREGEKPAIPLNLVGDFGGGGMMLAFGMVCAVLEA
CCCCHHHHCCCCCCEEEECHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
QRSGKGQVVDSSMVEGSAALMAMFYGLKSQGMFTDNRGTHMLDSGAHFYEVYETADGKYV
HHCCCCCEECHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEEEEEECCCCCEE
SIGSIEPQFYAQLCQLAELPPEDFGHQINPPKWPEMKQKLAAIIKQKTRDEWSALMEGTD
EECCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VCFAPVLSLEEAPSHPHNVARESFVTVNGAAQPAPTPRFSRTAAGKVKPASTAGADSRAV
HHHHHHHHHHHCCCCCHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LSQAGFSDSDIDRLIASGAVKQD
HHHCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]