| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834338
Identifier: 110834338
GI number: 110834338
Start: 1685272
End: 1685904
Strand: Direct
Name: 110834338
Synonym: ABO_1477
Alternate gene names: NA
Gene position: 1685272-1685904 (Clockwise)
Preceding gene: 110834337
Following gene: 110834339
Centisome position: 54.01
GC content: 53.24
Gene sequence:
>633_bases ATGAACTTCGTGCCCATAGAGCAAAGTGTTCAGCGTCGACGGCGAGCCGTCATTACTGGCCTAACACCATATATGAATGA ACCCGTGTTACGGGAAGCGATTAGCCACTGGCAACAGCATTATTCGCAGCGCCCAAGTTTTTCACTGCAAGGGTTTGTGA GTGATCTATGCCGCCTGTTCGATCTCAATGAGCGTAGGCATCACATTCATATGAGTTTGGTACAAGCCATGACGCTTTCC GACAGTGAACTGGCCGCTGACCCTCTGGCCATTAGTGACAAGAATCTCACCGACACTCATCCTTATACTTATGCCTTCCA GCTTCTGCTTCAAGCGCTTTGGCTGAGACTTGGCAAACCGACAGCCCGCCAATTGAAGGTGGATCAAGGGACGCAATTGC GACAGGCCAGTGTTAGCACAGAAACTCGGCTCACTATGGAATACTGGCTACAAGCACCGGACAAACCGCTAAGCCCCCTG CCACTGCCCAGCCTGCGCGATCAATTGAATCGTACCTACGTACTGCTATGCCAGCGGCTGGGGCCAGTGGAGGCTGACCG TCAGCTCAAGGGCGCCTACCAGACAACCTTACTCCAGCTTGATAACCCCGAAGGGCTGCAGGCACTGATGTAG
Upstream 100 bases:
>100_bases GCGAACATGCTGAAATCGGCTATCCTGAATTCCCCCAAAACACCCTATACAGCAGCGAAAATTATAGCGCAGAGAAGGCA AGCCGTCAGGAGCCGCGGCC
Downstream 100 bases:
>100_bases ACTTACTCTCTGTTACACAGCACAGGATCAGGTACTCTCAGAAGTTGAAGAGACCGAGGTTCGCACCACAGGGGAAATGA TGAAATTACATCACCAGATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MNFVPIEQSVQRRRRAVITGLTPYMNEPVLREAISHWQQHYSQRPSFSLQGFVSDLCRLFDLNERRHHIHMSLVQAMTLS DSELAADPLAISDKNLTDTHPYTYAFQLLLQALWLRLGKPTARQLKVDQGTQLRQASVSTETRLTMEYWLQAPDKPLSPL PLPSLRDQLNRTYVLLCQRLGPVEADRQLKGAYQTTLLQLDNPEGLQALM
Sequences:
>Translated_210_residues MNFVPIEQSVQRRRRAVITGLTPYMNEPVLREAISHWQQHYSQRPSFSLQGFVSDLCRLFDLNERRHHIHMSLVQAMTLS DSELAADPLAISDKNLTDTHPYTYAFQLLLQALWLRLGKPTARQLKVDQGTQLRQASVSTETRLTMEYWLQAPDKPLSPL PLPSLRDQLNRTYVLLCQRLGPVEADRQLKGAYQTTLLQLDNPEGLQALM >Mature_210_residues MNFVPIEQSVQRRRRAVITGLTPYMNEPVLREAISHWQQHYSQRPSFSLQGFVSDLCRLFDLNERRHHIHMSLVQAMTLS DSELAADPLAISDKNLTDTHPYTYAFQLLLQALWLRLGKPTARQLKVDQGTQLRQASVSTETRLTMEYWLQAPDKPLSPL PLPSLRDQLNRTYVLLCQRLGPVEADRQLKGAYQTTLLQLDNPEGLQALM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24149; Mature: 24149
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFVPIEQSVQRRRRAVITGLTPYMNEPVLREAISHWQQHYSQRPSFSLQGFVSDLCRLF CCCCCCHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH DLNERRHHIHMSLVQAMTLSDSELAADPLAISDKNLTDTHPYTYAFQLLLQALWLRLGKP CCCCHHHHHHHHHHHHHHCCCCHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC TARQLKVDQGTQLRQASVSTETRLTMEYWLQAPDKPLSPLPLPSLRDQLNRTYVLLCQRL HHHHEECCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC GPVEADRQLKGAYQTTLLQLDNPEGLQALM CCCCHHHHHHHHHHHHHEECCCCCHHHHCC >Mature Secondary Structure MNFVPIEQSVQRRRRAVITGLTPYMNEPVLREAISHWQQHYSQRPSFSLQGFVSDLCRLF CCCCCCHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH DLNERRHHIHMSLVQAMTLSDSELAADPLAISDKNLTDTHPYTYAFQLLLQALWLRLGKP CCCCHHHHHHHHHHHHHHCCCCHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC TARQLKVDQGTQLRQASVSTETRLTMEYWLQAPDKPLSPLPLPSLRDQLNRTYVLLCQRL HHHHEECCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC GPVEADRQLKGAYQTTLLQLDNPEGLQALM CCCCHHHHHHHHHHHHHEECCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA