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The map label for this gene is ybhD [C]

Identifier: 110834332

GI number: 110834332

Start: 1678698

End: 1679588

Strand: Direct

Name: ybhD [C]

Synonym: ABO_1471

Alternate gene names: 110834332

Gene position: 1678698-1679588 (Clockwise)

Preceding gene: 110834311

Following gene: 110834336

Centisome position: 53.8

GC content: 56.68

Gene sequence:

>891_bases
GTGGATGCCCCGGGAATGATCGATACCCCAACGCTAACCGCCTTTATGGCCGTCGCCGAAACAGGCTCATTTTCTGCTGC
CGCAGAACGCCTGTACATCACGCAACCGGCCATTAGCAAGCGCATTGCGCTACTGGAACAACAGCTTGAAGCCCGTTTGT
TTGACCGCGTAGGACGCCAGATTCAACTGACAGAAGCTGGGCGCTCATTGCTGCCTCGCGCCCGCCAGGTACTGATGGAC
GTGGAAGATATCGCCCGTGCAATACACGACCTGTCCGGTGAAGTCACTGGCAAGTTGCGCATCGGCACCAGCCATCATAT
TGGACTGCATAGATTGCCACCGGTTCTGCGCCAGTTCTCCCGAGATTACCCGCAGGTAAAACTGGATATTCACTTCATTG
ATTCGGAAGAAGCCTGGGAAGGTGTGCTGCACGGCGAGCTAGAGATGGGGGTTGTCACCTTACCGCCGCAACCGGATGAA
CGCCTGAATAGCGAGGTCATTTGGAACGACCCACTCGTATTCATGTGTGCACCGGAGCATCCTTTAGCGAAACAGGACAA
TCTGACGCTGGAATCCTTTACCGGTCACAGTGCCATTCTGCCCTCACCGGTCACCTTTACGCGCGGCATCGTGGAGCGAC
TGTTCGACGAGCATAACCTGAAGCTGGATATCGCCATGTCCACCAATTATCTGGAAACCATCCATATGATGGCGTCCATT
GGCCTGGGCTGGAGTGTTCTTCCCGCCACCATGGTCGACAGAGGCATGATTCAGCTGCCGGTGAATGTGCCACTACCCGA
ACGTCAGCTCGGCGTAGTGACTCACCCGGCACGAAGCCAATCCAACGCGGCCCAGGCATTCCTGCGCGCCCTGCGTGGGC
AGATCACCTGA

Upstream 100 bases:

>100_bases
TGGTTTATCACTGTTAATTAATGTAGAACTACGCCATCAATAAATCCAATTCATATTTTTCATTTTTAAGATAACCAATT
ATTATCCCCGTACTGACACT

Downstream 100 bases:

>100_bases
TCTGTCCACGGTGCGCTGAGCGAGTCACCCCGCCCGCCACCAACAACCCCGCAGCCAGCACCGCGACAAGCGTCGCGGCG
AAAAACAAATTTACGCCCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDAPGMIDTPTLTAFMAVAETGSFSAAAERLYITQPAISKRIALLEQQLEARLFDRVGRQIQLTEAGRSLLPRARQVLMD
VEDIARAIHDLSGEVTGKLRIGTSHHIGLHRLPPVLRQFSRDYPQVKLDIHFIDSEEAWEGVLHGELEMGVVTLPPQPDE
RLNSEVIWNDPLVFMCAPEHPLAKQDNLTLESFTGHSAILPSPVTFTRGIVERLFDEHNLKLDIAMSTNYLETIHMMASI
GLGWSVLPATMVDRGMIQLPVNVPLPERQLGVVTHPARSQSNAAQAFLRALRGQIT

Sequences:

>Translated_296_residues
MDAPGMIDTPTLTAFMAVAETGSFSAAAERLYITQPAISKRIALLEQQLEARLFDRVGRQIQLTEAGRSLLPRARQVLMD
VEDIARAIHDLSGEVTGKLRIGTSHHIGLHRLPPVLRQFSRDYPQVKLDIHFIDSEEAWEGVLHGELEMGVVTLPPQPDE
RLNSEVIWNDPLVFMCAPEHPLAKQDNLTLESFTGHSAILPSPVTFTRGIVERLFDEHNLKLDIAMSTNYLETIHMMASI
GLGWSVLPATMVDRGMIQLPVNVPLPERQLGVVTHPARSQSNAAQAFLRALRGQIT
>Mature_296_residues
MDAPGMIDTPTLTAFMAVAETGSFSAAAERLYITQPAISKRIALLEQQLEARLFDRVGRQIQLTEAGRSLLPRARQVLMD
VEDIARAIHDLSGEVTGKLRIGTSHHIGLHRLPPVLRQFSRDYPQVKLDIHFIDSEEAWEGVLHGELEMGVVTLPPQPDE
RLNSEVIWNDPLVFMCAPEHPLAKQDNLTLESFTGHSAILPSPVTFTRGIVERLFDEHNLKLDIAMSTNYLETIHMMASI
GLGWSVLPATMVDRGMIQLPVNVPLPERQLGVVTHPARSQSNAAQAFLRALRGQIT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=285, Percent_Identity=28.4210526315789, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788748, Length=288, Percent_Identity=28.125, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788481, Length=282, Percent_Identity=33.6879432624113, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787879, Length=298, Percent_Identity=34.5637583892617, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI157672245, Length=276, Percent_Identity=28.9855072463768, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=30.4526748971193, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790399, Length=289, Percent_Identity=23.5294117647059, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=24.4827586206897, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787601, Length=263, Percent_Identity=27.3764258555133, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87081904, Length=180, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI2367136, Length=264, Percent_Identity=26.8939393939394, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1790262, Length=249, Percent_Identity=30.1204819277108, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=28.3950617283951, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788297, Length=238, Percent_Identity=24.7899159663866, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787589, Length=255, Percent_Identity=28.6274509803922, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789204, Length=242, Percent_Identity=29.3388429752066, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=26.1324041811847, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788626, Length=293, Percent_Identity=27.6450511945392, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789440, Length=245, Percent_Identity=23.6734693877551, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787128, Length=129, Percent_Identity=34.1085271317829, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789639, Length=119, Percent_Identity=31.9327731092437, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788296, Length=239, Percent_Identity=25.5230125523013, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786713, Length=190, Percent_Identity=32.6315789473684, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786508, Length=183, Percent_Identity=31.1475409836066, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789506, Length=271, Percent_Identity=22.140221402214, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082024, Length=184, Percent_Identity=28.804347826087, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790208, Length=300, Percent_Identity=24.3333333333333, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787806, Length=150, Percent_Identity=30, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081978, Length=117, Percent_Identity=36.7521367521368, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=286, Percent_Identity=24.4755244755245, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994962, Length=80, Percent_Identity=47.5, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790783, Length=140, Percent_Identity=30, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI145693193, Length=116, Percent_Identity=31.8965517241379, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1 [H]

EC number: NA

Molecular weight: Translated: 32867; Mature: 32867

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAPGMIDTPTLTAFMAVAETGSFSAAAERLYITQPAISKRIALLEQQLEARLFDRVGRQ
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHCCE
IQLTEAGRSLLPRARQVLMDVEDIARAIHDLSGEVTGKLRIGTSHHIGLHRLPPVLRQFS
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHC
RDYPQVKLDIHFIDSEEAWEGVLHGELEMGVVTLPPQPDERLNSEVIWNDPLVFMCAPEH
CCCCEEEEEEEEECCHHHHHHHHCCCEEECEEECCCCCHHHCCCCEEECCCEEEEECCCC
PLAKQDNLTLESFTGHSAILPSPVTFTRGIVERLFDEHNLKLDIAMSTNYLETIHMMASI
CCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
GLGWSVLPATMVDRGMIQLPVNVPLPERQLGVVTHPARSQSNAAQAFLRALRGQIT
CCCHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDAPGMIDTPTLTAFMAVAETGSFSAAAERLYITQPAISKRIALLEQQLEARLFDRVGRQ
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHCCE
IQLTEAGRSLLPRARQVLMDVEDIARAIHDLSGEVTGKLRIGTSHHIGLHRLPPVLRQFS
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHC
RDYPQVKLDIHFIDSEEAWEGVLHGELEMGVVTLPPQPDERLNSEVIWNDPLVFMCAPEH
CCCCEEEEEEEEECCHHHHHHHHCCCEEECEEECCCCCHHHCCCCEEECCCEEEEECCCC
PLAKQDNLTLESFTGHSAILPSPVTFTRGIVERLFDEHNLKLDIAMSTNYLETIHMMASI
CCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
GLGWSVLPATMVDRGMIQLPVNVPLPERQLGVVTHPARSQSNAAQAFLRALRGQIT
CCCHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9108283 [H]