| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110834336
Identifier: 110834336
GI number: 110834336
Start: 1683334
End: 1683813
Strand: Direct
Name: 110834336
Synonym: ABO_1475
Alternate gene names: NA
Gene position: 1683334-1683813 (Clockwise)
Preceding gene: 110834332
Following gene: 110834337
Centisome position: 53.95
GC content: 56.88
Gene sequence:
>480_bases GTGAGCCCCATCTGGCTATTAAAAACAGAACCTGACGCGTTCAGCATCGATGATCTGCGCGACAGCAAAAACGCCACTAG CGGCTGGGACGGGGTACGCAACTATCAGGCCCGTAACCGCCTACGCGATGAGATGAAGGCCGGCGATACCGTGCTGATCT ATCACTCCAGTTGCGCAGTCCCGGCCATTGTTGGTGAAGCCGTCGTTACCAGCGACCCTTACCCAGATCCAACCCAATTT GACCCTGCTAGCGATGGCTATGATGCACGTAGCCGCCAGGATCATCCCCGCTGGTACCAGGCTGACGTACAGTATGTCTG CCACTACCCGCACCCCCTGACACTCAAACAGATACAGCACCATCCAGAGTTTGCGGACATGGAACTGGTTGTGCGGCCTC GCCTATCGGTGCAAAAAGTCTCCGAACGCCAGCTCCAGTTGATTCGACAGATGTGCCAGCTCGTTAGCGCCACCGCATAG
Upstream 100 bases:
>100_bases CAATATGGCTACTAAAGCTTAACAAACCGACCTTCTCGGTTTACATTTGCGACACCATAGCCCAGGCCAAGGAGTGCCTG CTTAAACAGCACCTACAGGA
Downstream 100 bases:
>100_bases AACGCGGAGCGCACCACCTCCATTTGCGCGCACCAAAATGGCGCACAAACTAATGATAAAGAAGTAGAAGAGCCACCCCC AACCGCCCGACATTCTGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MSPIWLLKTEPDAFSIDDLRDSKNATSGWDGVRNYQARNRLRDEMKAGDTVLIYHSSCAVPAIVGEAVVTSDPYPDPTQF DPASDGYDARSRQDHPRWYQADVQYVCHYPHPLTLKQIQHHPEFADMELVVRPRLSVQKVSERQLQLIRQMCQLVSATA
Sequences:
>Translated_159_residues MSPIWLLKTEPDAFSIDDLRDSKNATSGWDGVRNYQARNRLRDEMKAGDTVLIYHSSCAVPAIVGEAVVTSDPYPDPTQF DPASDGYDARSRQDHPRWYQADVQYVCHYPHPLTLKQIQHHPEFADMELVVRPRLSVQKVSERQLQLIRQMCQLVSATA >Mature_158_residues SPIWLLKTEPDAFSIDDLRDSKNATSGWDGVRNYQARNRLRDEMKAGDTVLIYHSSCAVPAIVGEAVVTSDPYPDPTQFD PASDGYDARSRQDHPRWYQADVQYVCHYPHPLTLKQIQHHPEFADMELVVRPRLSVQKVSERQLQLIRQMCQLVSATA
Specific function: Unknown
COG id: COG2947
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI83267861, Length=165, Percent_Identity=35.7575757575758, Blast_Score=115, Evalue=2e-26, Organism=Homo sapiens, GI40806221, Length=165, Percent_Identity=35.7575757575758, Blast_Score=115, Evalue=2e-26, Organism=Homo sapiens, GI7661804, Length=165, Percent_Identity=35.7575757575758, Blast_Score=115, Evalue=2e-26, Organism=Homo sapiens, GI83267859, Length=107, Percent_Identity=43.9252336448598, Blast_Score=99, Evalue=2e-21, Organism=Homo sapiens, GI40806219, Length=107, Percent_Identity=43.9252336448598, Blast_Score=99, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18167; Mature: 18035
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPIWLLKTEPDAFSIDDLRDSKNATSGWDGVRNYQARNRLRDEMKAGDTVLIYHSSCAV CCCEEEEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC PAIVGEAVVTSDPYPDPTQFDPASDGYDARSRQDHPRWYQADVQYVCHYPHPLTLKQIQH HHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCHHHHHC HPEFADMELVVRPRLSVQKVSERQLQLIRQMCQLVSATA CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SPIWLLKTEPDAFSIDDLRDSKNATSGWDGVRNYQARNRLRDEMKAGDTVLIYHSSCAV CCEEEEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC PAIVGEAVVTSDPYPDPTQFDPASDGYDARSRQDHPRWYQADVQYVCHYPHPLTLKQIQH HHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCHHHHHC HPEFADMELVVRPRLSVQKVSERQLQLIRQMCQLVSATA CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA