| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834184
Identifier: 110834184
GI number: 110834184
Start: 1500385
End: 1501176
Strand: Direct
Name: 110834184
Synonym: ABO_1323
Alternate gene names: NA
Gene position: 1500385-1501176 (Clockwise)
Preceding gene: 110834183
Following gene: 110834186
Centisome position: 48.09
GC content: 51.14
Gene sequence:
>792_bases GTGCCCCAACCCCCGACCCAAGAAGAAGATACCCGGCCATTTGTGGCTCCATGCCACAGCATTGATAACACCGCACCGCT GCGTTGGTTGCGCAAAGGGTGGCGCGACTTTCTTAATGCACCGGGGCCAAGCCTGCTCTATGGCGCGATAATGGTCTTTA TCAGCTACCTAATTAGTGCCGCGACCTGGTGGTTCGGCAATATGGGCCTGTATCTTGGCCTACTTTCAGGCTTTGTGTTC TTGGGGCCGCTACTCGCACTCAATCTTTACGCCATTAGTATCCAGTTGCAACAAGGCCGCCAACCAAGCCTGTCAGAAAG TCTGAAGCAGGCACGTTCATGCTTGGGGGATGCCCTGACCTTTACGGTCATTCTGGTGGTGGTATTTTTGGTGTGGGCCA GGGCCGCTAATTTGATCTATATCTTTTACCCGGTGAACGAGTGGCATTTGGAAAATGTGCTGCTTTTTTTTGGAGTCGGC AGTAGCGTAGGAGCGTTATTTTGCGCCATCGTTTTCACGGTTAGTGCCTTTTCGTTGCCCATGATTATGGATCGCAAGAC CGATATGGTCACGGGGGTTATCACGAGTACAAATGCGGTATTACGGAATAAGCTACCTCTATTTATCTGGGCCAGCTTGA TTGGGGGTTGCCTATTGGTCGGGCTGTTAACAGCATATCTAGGTTTATTGGTGCTACTACCGGTACTTGGCTTTGCTACC TGGCATGCTTACCGAGAGGTGATCGACGCAGAGGAATGGGAACCGCGATTTGAGTTGCCCAAAGAAGATTGA
Upstream 100 bases:
>100_bases ATATGAATAACGATGACGTTACTGTGCAGTAACCTGGGTAGGCCGAGAAGCTCGCCTAGGTAAGTGGTTGTTTTCCTTTT AAAGGTGAGAGGTGAGAGCC
Downstream 100 bases:
>100_bases AATTTGACTGATAACACCACTACAGGGTCCGCCATGTGGCGGACCGATGCGGTGGTGTGCGGTCAGTAGACTTAATTTTC GTCCATGTACCCGAGCAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Cytochrome C Oxidase Subunit I; Conserved Integral Membrane Protein; Integral Membrane-Like Protein; Integral Membrane; Integral Membrane Protein-Like
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MPQPPTQEEDTRPFVAPCHSIDNTAPLRWLRKGWRDFLNAPGPSLLYGAIMVFISYLISAATWWFGNMGLYLGLLSGFVF LGPLLALNLYAISIQLQQGRQPSLSESLKQARSCLGDALTFTVILVVVFLVWARAANLIYIFYPVNEWHLENVLLFFGVG SSVGALFCAIVFTVSAFSLPMIMDRKTDMVTGVITSTNAVLRNKLPLFIWASLIGGCLLVGLLTAYLGLLVLLPVLGFAT WHAYREVIDAEEWEPRFELPKED
Sequences:
>Translated_263_residues MPQPPTQEEDTRPFVAPCHSIDNTAPLRWLRKGWRDFLNAPGPSLLYGAIMVFISYLISAATWWFGNMGLYLGLLSGFVF LGPLLALNLYAISIQLQQGRQPSLSESLKQARSCLGDALTFTVILVVVFLVWARAANLIYIFYPVNEWHLENVLLFFGVG SSVGALFCAIVFTVSAFSLPMIMDRKTDMVTGVITSTNAVLRNKLPLFIWASLIGGCLLVGLLTAYLGLLVLLPVLGFAT WHAYREVIDAEEWEPRFELPKED >Mature_262_residues PQPPTQEEDTRPFVAPCHSIDNTAPLRWLRKGWRDFLNAPGPSLLYGAIMVFISYLISAATWWFGNMGLYLGLLSGFVFL GPLLALNLYAISIQLQQGRQPSLSESLKQARSCLGDALTFTVILVVVFLVWARAANLIYIFYPVNEWHLENVLLFFGVGS SVGALFCAIVFTVSAFSLPMIMDRKTDMVTGVITSTNAVLRNKLPLFIWASLIGGCLLVGLLTAYLGLLVLLPVLGFATW HAYREVIDAEEWEPRFELPKED
Specific function: Unknown
COG id: COG5473
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29291; Mature: 29160
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQPPTQEEDTRPFVAPCHSIDNTAPLRWLRKGWRDFLNAPGPSLLYGAIMVFISYLISA CCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ATWWFGNMGLYLGLLSGFVFLGPLLALNLYAISIQLQQGRQPSLSESLKQARSCLGDALT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHH FTVILVVVFLVWARAANLIYIFYPVNEWHLENVLLFFGVGSSVGALFCAIVFTVSAFSLP HHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHH MIMDRKTDMVTGVITSTNAVLRNKLPLFIWASLIGGCLLVGLLTAYLGLLVLLPVLGFAT HHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WHAYREVIDAEEWEPRFELPKED HHHHHHHHCHHCCCCCCCCCCCC >Mature Secondary Structure PQPPTQEEDTRPFVAPCHSIDNTAPLRWLRKGWRDFLNAPGPSLLYGAIMVFISYLISA CCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ATWWFGNMGLYLGLLSGFVFLGPLLALNLYAISIQLQQGRQPSLSESLKQARSCLGDALT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHH FTVILVVVFLVWARAANLIYIFYPVNEWHLENVLLFFGVGSSVGALFCAIVFTVSAFSLP HHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHH MIMDRKTDMVTGVITSTNAVLRNKLPLFIWASLIGGCLLVGLLTAYLGLLVLLPVLGFAT HHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WHAYREVIDAEEWEPRFELPKED HHHHHHHHCHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA