| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is gspK [H]
Identifier: 110834179
GI number: 110834179
Start: 1494235
End: 1495248
Strand: Direct
Name: gspK [H]
Synonym: ABO_1318
Alternate gene names: 110834179
Gene position: 1494235-1495248 (Clockwise)
Preceding gene: 110834178
Following gene: 110834180
Centisome position: 47.89
GC content: 54.14
Gene sequence:
>1014_bases GTGATCGTGCTGCTACTGCTAGCCTTACTGACGACCATTACCGTTGAAGTGCTTTTCCGGCAAGATCGTTTCCTTACCCG CGCCGATAATCTATTGCAATGGGACAAGCGCTACCAGTACGCCATGGCAGCTGAGGTGGTTGCCCAGCAGGGTCTAATTG ATGACTTGCAGGATGACCAAAAGAATAACGCCCTAGTGGATGATTGCGTTGACGAGCAGTGGGCCGTGCAATTGCCGCCA ACGCCCTATGAAGATGCCATACTCAGCGCCAGCGTGCAGGACCTGCAAGGCCGTTTCAATTTGAACTGGCTCATTACCGC AGAAGGTGACAATTTTGTTCGAGACCAGGATGGTATCGACAGGCTCACCCGCCTGATCGAGCTCACCTTTCCCCAAGAAA CAGACGCATCGCGGCTCGCCAACGAAATGGCCGACTGGCTAGATTCCAACAATATAGTGGACGGAGTTGAAGGGGCGGAA GATGCGGATTACCGCACCCGGCGGACTCCAAATATGCCCGCCGCGCATGAATCTGAACTGCGTGCCTTGCTCAGCTTCCA GGTAGCTAACCAGCCCCAGGACGGCATGATTTGGGGCTTGTTTACAGCTTTGCCATTGGGCACAACATTGAACGTTAATA CTGCACCGCTTCAGGTACTGGATGCGGTGTTAGGTGCCACGGCGGGTGATACCGCGGCACAAGCTATTGTTAAAGAGCGG GAGCAGGAGCCGATTGACGCCATTAGCGACCTGATGCAGGTTGCTCCTTTTAGTGAAATGGATCCCGACATCAAGCAGCA GATAAGCAGCTTGCTCGGTGTCAGCAGTGAGTATTTTCAGGTTATGGTGGATGTAGAGGTCGACGGACAACTAAGTCGCC TAGTAAGCCGGCTGCGCCGCCGCAATGGTGACGGGCAGAGCACTGAAGTATTTAGTCGGCAGGTCAGCCCATTGCTAACC CCACTCGAACCGGCATGCAATCCCTTCTACAATGTGACCCAAGGCTCGTCTTGA
Upstream 100 bases:
>100_bases GCAACATTGTGCACAGGTATTACCGAACAGTGGTGAATCCATGGGGATGACGGTAAACCTGTCAGGTCGAATGACTCGAA GGCAAGGGGGCATGGCGTTG
Downstream 100 bases:
>100_bases TACACTGGACTAACGGAGCAGGCTGTTAGAAAGTGCATTAAGCGTCGGCCATGCCAGACGGACACATGCAAAGATAATAA CGCGGATATAACGACCAAAG
Product: general secretion pathway protein GspK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQKNNALVDDCVDEQWAVQLPP TPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGIDRLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAE DADYRTRRTPNMPAAHESELRALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRRRNGDGQSTEVFSRQVSPLLT PLEPACNPFYNVTQGSS
Sequences:
>Translated_337_residues MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQKNNALVDDCVDEQWAVQLPP TPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGIDRLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAE DADYRTRRTPNMPAAHESELRALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRRRNGDGQSTEVFSRQVSPLLT PLEPACNPFYNVTQGSS >Mature_337_residues MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQKNNALVDDCVDEQWAVQLPP TPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGIDRLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAE DADYRTRRTPNMPAAHESELRALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRRRNGDGQSTEVFSRQVSPLLT PLEPACNPFYNVTQGSS
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG3156
COG function: function code U; Type II secretory pathway, component PulK
Gene ontology:
Cell location: Cell inner membrane (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP K family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005628 [H]
Pfam domain/function: PF03934 GspK [H]
EC number: NA
Molecular weight: Translated: 37487; Mature: 37487
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC KNNALVDDCVDEQWAVQLPPTPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGID CCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHH RLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAEDADYRTRRTPNMPAAHESEL HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHH RALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER HHHHHHHHCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHH EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRR CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHH RNGDGQSTEVFSRQVSPLLTPLEPACNPFYNVTQGSS CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIVLLLLALLTTITVEVLFRQDRFLTRADNLLQWDKRYQYAMAAEVVAQQGLIDDLQDDQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC KNNALVDDCVDEQWAVQLPPTPYEDAILSASVQDLQGRFNLNWLITAEGDNFVRDQDGID CCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHH RLTRLIELTFPQETDASRLANEMADWLDSNNIVDGVEGAEDADYRTRRTPNMPAAHESEL HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHH RALLSFQVANQPQDGMIWGLFTALPLGTTLNVNTAPLQVLDAVLGATAGDTAAQAIVKER HHHHHHHHCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHH EQEPIDAISDLMQVAPFSEMDPDIKQQISSLLGVSSEYFQVMVDVEVDGQLSRLVSRLRR CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHH RNGDGQSTEVFSRQVSPLLTPLEPACNPFYNVTQGSS CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1588814; 10984043 [H]