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The map label for this gene is ydaO

Identifier: 110834127

GI number: 110834127

Start: 1440968

End: 1441822

Strand: Direct

Name: ydaO

Synonym: ABO_1266

Alternate gene names: 110834127

Gene position: 1440968-1441822 (Clockwise)

Preceding gene: 110834126

Following gene: 110834128

Centisome position: 46.18

GC content: 51.81

Gene sequence:

>855_bases
ATGTCAGACAACGCTGATACCAAAAAACGCACCCGCCTGAACAAACTGCAAAAGAAACTGCGCAGAGAAACGGGCCGTGC
CATTGCTGATTTCAATATGATCAGCGAGGGCGACAAGGTAATGGTGTGTTTGTCCGGCGGTAAGGATTCTTACACTATGT
TGGAGATTCTACGGAACCTTCAGCACTCTGCCCCGGTGAATTTCGAACTGGTGGCAGTAAACATGGACCAGAAACAGCCC
GGTTTCCCAGAGCACATCCTCCCTGAGTATCTGGAAAAGGAAGGCGTGGCATACCACATTCTGGAGAAAGACACCTATTC
CATCGTCAAAGAAAAGGTGCCAGAAGGAAAAACTACCTGCGGCCTGTGTTCACGCCTGCGCCGGGGCAGCCTCTACGGGT
TTGCCGAGGAAATAGGTGCCAATAAGATTGCTCTTGGTCACCATCGCGATGACATCGTCGAAACCTTGTTTCTGAACATG
TTCTATGGCGGCAAAATGAAAGCCATGCCCCCCAAACTGCGCAGCGATGACAGCCGTAATGTGGTGATTCGCCCGCTGGC
GTATTGCCGCGAGAAAGACATCATCGAGTTCTCGGCCTTGAAGGAATACCCGATCATTCCCTGCAATTTATGTGGCTCCC
AGAAGAACTTGCAGCGGCAAGTGATTAAGGAGATGTTGCAGCAATGGGACAAGCAGCAGCCGGGACGGATTGAAAATATC
TTTGCCGCAGTGCAAAACATCGCCCCTTCACAGCTGGCGGATACCCGCCTGTTTGACTTCGAAAACCTTGAGCAAGGGCA
GCAGCAGGGCGGTGATCAAGCCCATCGTCTCGATGTGGTTAATCTGTTCGGGTGA

Upstream 100 bases:

>100_bases
ATCAGGTTATTATCGCCGGCCGCGAAGGGGCGGGCATATACTTGAAGCGCTGGGCTCCCTCGCTGTACCGCCGACTGATC
CGCAAAATGAAGGTCACCTG

Downstream 100 bases:

>100_bases
TCAAAAAATAACAAAACAGACTTTGTTTACCACTAAACATGATTCACGGCGCCGTTTCCGGTAAAATGCGGTCGCCTTAT
TTCGGGGCGCCCGCCTTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSDNADTKKRTRLNKLQKKLRRETGRAIADFNMISEGDKVMVCLSGGKDSYTMLEILRNLQHSAPVNFELVAVNMDQKQP
GFPEHILPEYLEKEGVAYHILEKDTYSIVKEKVPEGKTTCGLCSRLRRGSLYGFAEEIGANKIALGHHRDDIVETLFLNM
FYGGKMKAMPPKLRSDDSRNVVIRPLAYCREKDIIEFSALKEYPIIPCNLCGSQKNLQRQVIKEMLQQWDKQQPGRIENI
FAAVQNIAPSQLADTRLFDFENLEQGQQQGGDQAHRLDVVNLFG

Sequences:

>Translated_284_residues
MSDNADTKKRTRLNKLQKKLRRETGRAIADFNMISEGDKVMVCLSGGKDSYTMLEILRNLQHSAPVNFELVAVNMDQKQP
GFPEHILPEYLEKEGVAYHILEKDTYSIVKEKVPEGKTTCGLCSRLRRGSLYGFAEEIGANKIALGHHRDDIVETLFLNM
FYGGKMKAMPPKLRSDDSRNVVIRPLAYCREKDIIEFSALKEYPIIPCNLCGSQKNLQRQVIKEMLQQWDKQQPGRIENI
FAAVQNIAPSQLADTRLFDFENLEQGQQQGGDQAHRLDVVNLFG
>Mature_283_residues
SDNADTKKRTRLNKLQKKLRRETGRAIADFNMISEGDKVMVCLSGGKDSYTMLEILRNLQHSAPVNFELVAVNMDQKQPG
FPEHILPEYLEKEGVAYHILEKDTYSIVKEKVPEGKTTCGLCSRLRRGSLYGFAEEIGANKIALGHHRDDIVETLFLNMF
YGGKMKAMPPKLRSDDSRNVVIRPLAYCREKDIIEFSALKEYPIIPCNLCGSQKNLQRQVIKEMLQQWDKQQPGRIENIF
AAVQNIAPSQLADTRLFDFENLEQGQQQGGDQAHRLDVVNLFG

Specific function: Required for the thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32)

COG id: COG0037

COG function: function code D; Predicted ATPase of the PP-loop superfamily implicated in cell cycle control

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TtcA family

Homologues:

Organism=Escherichia coli, GI1787606, Length=269, Percent_Identity=72.8624535315985, Blast_Score=420, Evalue=1e-119,
Organism=Caenorhabditis elegans, GI193211090, Length=234, Percent_Identity=33.3333333333333, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17540090, Length=232, Percent_Identity=24.1379310344828, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24651972, Length=230, Percent_Identity=26.0869565217391, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TTCA_ALCBS (Q0VQ34)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_692986.1
- ProteinModelPortal:   Q0VQ34
- SMR:   Q0VQ34
- STRING:   Q0VQ34
- GeneID:   4211790
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_1266
- NMPDR:   fig|393595.12.peg.1277
- eggNOG:   COG0037
- HOGENOM:   HBG347038
- OMA:   EHILPEY
- PhylomeDB:   Q0VQ34
- BioCyc:   ABOR393595:ABO_1266-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01850
- InterPro:   IPR012089
- InterPro:   IPR014729
- InterPro:   IPR011063
- Gene3D:   G3DSA:3.40.50.620
- PIRSF:   PIRSF004976

Pfam domain/function: PF01171 ATP_bind_3

EC number: NA

Molecular weight: Translated: 32318; Mature: 32186

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNADTKKRTRLNKLQKKLRRETGRAIADFNMISEGDKVMVCLSGGKDSYTMLEILRNL
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH
QHSAPVNFELVAVNMDQKQPGFPEHILPEYLEKEGVAYHILEKDTYSIVKEKVPEGKTTC
HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCHH
GLCSRLRRGSLYGFAEEIGANKIALGHHRDDIVETLFLNMFYGGKMKAMPPKLRSDDSRN
HHHHHHHHCCCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VVIRPLAYCREKDIIEFSALKEYPIIPCNLCGSQKNLQRQVIKEMLQQWDKQQPGRIENI
EEECCHHHHCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
FAAVQNIAPSQLADTRLFDFENLEQGQQQGGDQAHRLDVVNLFG
HHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEECCC
>Mature Secondary Structure 
SDNADTKKRTRLNKLQKKLRRETGRAIADFNMISEGDKVMVCLSGGKDSYTMLEILRNL
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH
QHSAPVNFELVAVNMDQKQPGFPEHILPEYLEKEGVAYHILEKDTYSIVKEKVPEGKTTC
HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCHH
GLCSRLRRGSLYGFAEEIGANKIALGHHRDDIVETLFLNMFYGGKMKAMPPKLRSDDSRN
HHHHHHHHCCCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VVIRPLAYCREKDIIEFSALKEYPIIPCNLCGSQKNLQRQVIKEMLQQWDKQQPGRIENI
EEECCHHHHCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
FAAVQNIAPSQLADTRLFDFENLEQGQQQGGDQAHRLDVVNLFG
HHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA