| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834103
Identifier: 110834103
GI number: 110834103
Start: 1415267
End: 1417588
Strand: Direct
Name: 110834103
Synonym: ABO_1242
Alternate gene names: NA
Gene position: 1415267-1417588 (Clockwise)
Preceding gene: 110834096
Following gene: 110834104
Centisome position: 45.36
GC content: 53.7
Gene sequence:
>2322_bases ATGGGGACAGTGGGAATAACAATGAAAGAGACTTGGAGTCGCTGGGTGGTGGAGCATCCAGTGTGGGTGCTATTGATTTG TAGTGCGCTATGCGTAGTCATGGCCACCGGACTGCAGGGGTTTCGCAATAATAACGATCCACGCATTTTCTTTACCCAGG AAAACCCTGATTTCAAACGGTTTATGGCCCTGGAAGACAGCTTTACCGCCAATGAGGTGGTGTTGTTTGTGGTACACCCG AAGAACGGTCGGGTGTTCGAACCGCAAACGTTGGCGGCGATTGAGTCACTGACTGACGATGCTTGGACGCTACCGTACTC CACCCGGGTGGATTCCCTGACCAACTTCCAGCATACCGAGGTAGATGGAGACGAACTGTACGTGGCACCTCTGGTGGAAG ATGCCGCAGACATGGCACCGAATGAGATAGCCTTGGTACGCGAAATTGCCCTGAAAGAACCTGCATTGGTTGGGCGGCTG GTCTCTGAAAAGGGGCATGTGGCGGGCATCGTGGCTACTGTAACCATGGATGAGGGCAACACCGAAGCGCCGGTGATTAC CCAGGCGGCCCGCGAGATGGCACAGGCCTACCGGGAGCGTTACCCGGATATCGAGTTTATGGTCACCGGTACGGTGGTGT TTTCCCAGGCTTCCGCCGATGCCACCGAACAATCCATGGTGACCACCTTGCCATTGGCTTTTGTGGTGATGCTGCTGTGT CTGTGGCTGATTATGCGCAGTGCCATTTTTGTGGTCGTGACGGTGATGGTGATTGGGTTTTCCATCGCCTCGGCTATGGG CATTGCCACGTGGCTGGGGATAGAGTTTTCGCCCATCGTGGGTATGGCGCCCGCCATGATTCTGACCCTGGCAGTGGCGG ATTCAGTGCATATTCTGGCCAGCTACCGGCACGAATGTTTGCAAGGCAAGGAGCGGGCGGCGGCTATGCTAGAAAGCCTG CGCATCAATATTCAGCCGGTCTGGCTCACCAGTTTTACTACGGCGATTGGCTTTGCAATTCTGAATTTCTCCGAGTCTCA ACCGTTCCGTGCTTTAGGGAATGTGGTATTGATCGGGGTGCTGCTGGCGTTTGTGTTCTCGGTCGTGCTGCTACCGGCTC TGGTGATGTTGCTGCCGCACCGTATTGAGCCGGGTAAGCAGCGGGATTTTGCTCCCTTGATGGGGGCGCTGGCCGCACAT CTGAATCGCCATTTCAAACCCTGGTTGCTGGGCATGTCAGCGGTGGTAGTGGTGCTAACCGCCGCCATCGGCTTGAACCG CATCAATGATGTGTTTAATGAATATTTTGATGAAACCTTTGAGGTTCGTCAGGTGAACGATTTCGCCATGAGCAATCTTA CCGGCATGCATCGTATTGATTATGCGGTGCACTCCGGGGAGTCTGGCGGGGCCATGGAGCCTGCGTACCTGAAGCACATT GATGATTTAATTATCTGGTTGGAGCAACAGGATGAAGTGGTCTATGCCTCAGCCTATTCAGATGTCATTAAGCGGCTTAA TCGAGACATGCATGGCGGTGATTCGCAGTGGTATCGCATTCCGCAATCCCGCGAGCTAATTTCTCAGTACACCTTGCTGT ATGAATTATCGTTGCCCCAAGGGCTAGGCTTGGAAGATCAATTGGATATCGATAAGGAACAAGCGAGGGTGATCGTCTTG CTAGAAAACATTGGTTCGCACCCGGTACTGGAGTTCAATGAACGAGTTGAAGCGTGGATGGAGGATCATTGGCCGCAATA CATGCACAGCAAAGGAACCGGCATGGACATTCTGTTTGGCCGGGTCACCATGCGCAATATTCAAAGCATGCTCGGGGGTG CGCTGGTCGCCTTGGTTAGTGTTTCGGTGCTGTTGGTCATAGCGCTGCGATCTGTGCGCTACGGGGCCTTGTCATTGCTG CCCAACCTGTTGCCGGCGGCCATGGCTTTTGGGTTATGGGGGCTGGTGAACGGCGAAATTGGACTGGCAGTGTCAGTGGT GGCCTGTATGACCTTGGGGATTGTGGTCGATGACACGGTGCATTTCCTCAGCAAATATGTGCGTGCCAAACGTGAATTAG GCCTTAATACTGAACAGGCGGTGGAATATGCCTTGCGCACCGTTGGTGTGGCACTGGTGGCCACATCGGTGGTATTGGTG GCCAACTTTGCGGTGATTGGTACCAGCCATTTTTATCCTAATTCCAGCATGGGGCAGTTATCGGCAATCACCATTGCCAT GGCGTTGATTGTAGATTTCTTCTTTTTCGTGCCGTTGCTGGTTGCACTGGACCGCCGTAAGCAGATTAGGGCGGGTGCAT AG
Upstream 100 bases:
>100_bases CGAAATCCTAGGGGAGGTTTACGTTAACGTAAAGTGGTGATTTTGGCCTTTCCGGTCCGTGACACTGTATTTACCTATGC CTAGACTCCCAACGTAATCT
Downstream 100 bases:
>100_bases GCTCTAGCCAGTGTGATAAGGCGGTGTTAACGTAGCTCGAAACCGGTTTTCCCGTTTCTTCGGAACAAAACACAGTGTCA TACAAGAAAGATCGAAAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Exporter Of RND Superfamily Protein-Like Protein; Patched Family Protein; RND Superfamily Exporter; Exporter Of RND Superfamily; Exporter Of RND Superfamily Protein; Integral Membrane Protein; Efflux Transporter Hydrophobe/Amphiphile Efflux-3 Family; RND Family Efflux Transporter; Histidine Kinase; MMPL Domain-Containing Protein; Mmpl Family; Sterol-Sensing 5tm Box Domain Protein; MMPL Domain Protein; Transporter RND Superfamily
Number of amino acids: Translated: 773; Mature: 772
Protein sequence:
>773_residues MGTVGITMKETWSRWVVEHPVWVLLICSALCVVMATGLQGFRNNNDPRIFFTQENPDFKRFMALEDSFTANEVVLFVVHP KNGRVFEPQTLAAIESLTDDAWTLPYSTRVDSLTNFQHTEVDGDELYVAPLVEDAADMAPNEIALVREIALKEPALVGRL VSEKGHVAGIVATVTMDEGNTEAPVITQAAREMAQAYRERYPDIEFMVTGTVVFSQASADATEQSMVTTLPLAFVVMLLC LWLIMRSAIFVVVTVMVIGFSIASAMGIATWLGIEFSPIVGMAPAMILTLAVADSVHILASYRHECLQGKERAAAMLESL RINIQPVWLTSFTTAIGFAILNFSESQPFRALGNVVLIGVLLAFVFSVVLLPALVMLLPHRIEPGKQRDFAPLMGALAAH LNRHFKPWLLGMSAVVVVLTAAIGLNRINDVFNEYFDETFEVRQVNDFAMSNLTGMHRIDYAVHSGESGGAMEPAYLKHI DDLIIWLEQQDEVVYASAYSDVIKRLNRDMHGGDSQWYRIPQSRELISQYTLLYELSLPQGLGLEDQLDIDKEQARVIVL LENIGSHPVLEFNERVEAWMEDHWPQYMHSKGTGMDILFGRVTMRNIQSMLGGALVALVSVSVLLVIALRSVRYGALSLL PNLLPAAMAFGLWGLVNGEIGLAVSVVACMTLGIVVDDTVHFLSKYVRAKRELGLNTEQAVEYALRTVGVALVATSVVLV ANFAVIGTSHFYPNSSMGQLSAITIAMALIVDFFFFVPLLVALDRRKQIRAGA
Sequences:
>Translated_773_residues MGTVGITMKETWSRWVVEHPVWVLLICSALCVVMATGLQGFRNNNDPRIFFTQENPDFKRFMALEDSFTANEVVLFVVHP KNGRVFEPQTLAAIESLTDDAWTLPYSTRVDSLTNFQHTEVDGDELYVAPLVEDAADMAPNEIALVREIALKEPALVGRL VSEKGHVAGIVATVTMDEGNTEAPVITQAAREMAQAYRERYPDIEFMVTGTVVFSQASADATEQSMVTTLPLAFVVMLLC LWLIMRSAIFVVVTVMVIGFSIASAMGIATWLGIEFSPIVGMAPAMILTLAVADSVHILASYRHECLQGKERAAAMLESL RINIQPVWLTSFTTAIGFAILNFSESQPFRALGNVVLIGVLLAFVFSVVLLPALVMLLPHRIEPGKQRDFAPLMGALAAH LNRHFKPWLLGMSAVVVVLTAAIGLNRINDVFNEYFDETFEVRQVNDFAMSNLTGMHRIDYAVHSGESGGAMEPAYLKHI DDLIIWLEQQDEVVYASAYSDVIKRLNRDMHGGDSQWYRIPQSRELISQYTLLYELSLPQGLGLEDQLDIDKEQARVIVL LENIGSHPVLEFNERVEAWMEDHWPQYMHSKGTGMDILFGRVTMRNIQSMLGGALVALVSVSVLLVIALRSVRYGALSLL PNLLPAAMAFGLWGLVNGEIGLAVSVVACMTLGIVVDDTVHFLSKYVRAKRELGLNTEQAVEYALRTVGVALVATSVVLV ANFAVIGTSHFYPNSSMGQLSAITIAMALIVDFFFFVPLLVALDRRKQIRAGA >Mature_772_residues GTVGITMKETWSRWVVEHPVWVLLICSALCVVMATGLQGFRNNNDPRIFFTQENPDFKRFMALEDSFTANEVVLFVVHPK NGRVFEPQTLAAIESLTDDAWTLPYSTRVDSLTNFQHTEVDGDELYVAPLVEDAADMAPNEIALVREIALKEPALVGRLV SEKGHVAGIVATVTMDEGNTEAPVITQAAREMAQAYRERYPDIEFMVTGTVVFSQASADATEQSMVTTLPLAFVVMLLCL WLIMRSAIFVVVTVMVIGFSIASAMGIATWLGIEFSPIVGMAPAMILTLAVADSVHILASYRHECLQGKERAAAMLESLR INIQPVWLTSFTTAIGFAILNFSESQPFRALGNVVLIGVLLAFVFSVVLLPALVMLLPHRIEPGKQRDFAPLMGALAAHL NRHFKPWLLGMSAVVVVLTAAIGLNRINDVFNEYFDETFEVRQVNDFAMSNLTGMHRIDYAVHSGESGGAMEPAYLKHID DLIIWLEQQDEVVYASAYSDVIKRLNRDMHGGDSQWYRIPQSRELISQYTLLYELSLPQGLGLEDQLDIDKEQARVIVLL ENIGSHPVLEFNERVEAWMEDHWPQYMHSKGTGMDILFGRVTMRNIQSMLGGALVALVSVSVLLVIALRSVRYGALSLLP NLLPAAMAFGLWGLVNGEIGLAVSVVACMTLGIVVDDTVHFLSKYVRAKRELGLNTEQAVEYALRTVGVALVATSVVLVA NFAVIGTSHFYPNSSMGQLSAITIAMALIVDFFFFVPLLVALDRRKQIRAGA
Specific function: Unknown
COG id: COG1033
COG function: function code R; Predicted exporters of the RND superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85272; Mature: 85141
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTVGITMKETWSRWVVEHPVWVLLICSALCVVMATGLQGFRNNNDPRIFFTQENPDFKR CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHH FMALEDSFTANEVVLFVVHPKNGRVFEPQTLAAIESLTDDAWTLPYSTRVDSLTNFQHTE HHHHCCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHCCCCEECCCCCCHHHHCCCCCCC VDGDELYVAPLVEDAADMAPNEIALVREIALKEPALVGRLVSEKGHVAGIVATVTMDEGN CCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEEECCCC TEAPVITQAAREMAQAYRERYPDIEFMVTGTVVFSQASADATEQSMVTTLPLAFVVMLLC CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH LWLIMRSAIFVVVTVMVIGFSIASAMGIATWLGIEFSPIVGMAPAMILTLAVADSVHILA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH SYRHECLQGKERAAAMLESLRINIQPVWLTSFTTAIGFAILNFSESQPFRALGNVVLIGV HHHHHHHCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LLAFVFSVVLLPALVMLLPHRIEPGKQRDFAPLMGALAAHLNRHFKPWLLGMSAVVVVLT HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH AAIGLNRINDVFNEYFDETFEVRQVNDFAMSNLTGMHRIDYAVHSGESGGAMEPAYLKHI HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCHHHHHHH DDLIIWLEQQDEVVYASAYSDVIKRLNRDMHGGDSQWYRIPQSRELISQYTLLYELSLPQ HHHHEEEECCCCEEEHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHEEECCCC GLGLEDQLDIDKEQARVIVLLENIGSHPVLEFNERVEAWMEDHWPQYMHSKGTGMDILFG CCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHH RVTMRNIQSMLGGALVALVSVSVLLVIALRSVRYGALSLLPNLLPAAMAFGLWGLVNGEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH GLAVSVVACMTLGIVVDDTVHFLSKYVRAKRELGLNTEQAVEYALRTVGVALVATSVVLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH ANFAVIGTSHFYPNSSMGQLSAITIAMALIVDFFFFVPLLVALDRRKQIRAGA HHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GTVGITMKETWSRWVVEHPVWVLLICSALCVVMATGLQGFRNNNDPRIFFTQENPDFKR CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHH FMALEDSFTANEVVLFVVHPKNGRVFEPQTLAAIESLTDDAWTLPYSTRVDSLTNFQHTE HHHHCCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHCCCCEECCCCCCHHHHCCCCCCC VDGDELYVAPLVEDAADMAPNEIALVREIALKEPALVGRLVSEKGHVAGIVATVTMDEGN CCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEEECCCC TEAPVITQAAREMAQAYRERYPDIEFMVTGTVVFSQASADATEQSMVTTLPLAFVVMLLC CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH LWLIMRSAIFVVVTVMVIGFSIASAMGIATWLGIEFSPIVGMAPAMILTLAVADSVHILA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH SYRHECLQGKERAAAMLESLRINIQPVWLTSFTTAIGFAILNFSESQPFRALGNVVLIGV HHHHHHHCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LLAFVFSVVLLPALVMLLPHRIEPGKQRDFAPLMGALAAHLNRHFKPWLLGMSAVVVVLT HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH AAIGLNRINDVFNEYFDETFEVRQVNDFAMSNLTGMHRIDYAVHSGESGGAMEPAYLKHI HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCHHHHHHH DDLIIWLEQQDEVVYASAYSDVIKRLNRDMHGGDSQWYRIPQSRELISQYTLLYELSLPQ HHHHEEEECCCCEEEHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHEEECCCC GLGLEDQLDIDKEQARVIVLLENIGSHPVLEFNERVEAWMEDHWPQYMHSKGTGMDILFG CCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHH RVTMRNIQSMLGGALVALVSVSVLLVIALRSVRYGALSLLPNLLPAAMAFGLWGLVNGEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH GLAVSVVACMTLGIVVDDTVHFLSKYVRAKRELGLNTEQAVEYALRTVGVALVATSVVLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH ANFAVIGTSHFYPNSSMGQLSAITIAMALIVDFFFFVPLLVALDRRKQIRAGA HHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA