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The map label for this gene is sohB [H]

Identifier: 110834091

GI number: 110834091

Start: 1401049

End: 1402101

Strand: Direct

Name: sohB [H]

Synonym: ABO_1230

Alternate gene names: 110834091

Gene position: 1401049-1402101 (Clockwise)

Preceding gene: 110834090

Following gene: 110834092

Centisome position: 44.9

GC content: 51.28

Gene sequence:

>1053_bases
GTGATCGCGTTTTTAATGGAATACGGCATGTTTCTAGCCAAGGTTGCCACCCTCGTAGTGGCAATTTTGTTTATTTTTGG
TGGCATTGCGGCGGCGGCCTCACGGAGTCGTGGTAAGGGTGACCAGGATGGTGAACTGAAAGTCCGCCACCTCAATGAAG
AGTTCGATGATCTCAAGGAGTCTCTCGAGGCGGAAATTATCCCGGAAGCCCAGCGCAAAAAAGCCCACAAGGCTAAGCGA
AAACAGGAGAAGCTTGAAGCCAAACAAAAAAAGAAAGCCGGCACCGAAGACAAAATTCTGCCGCGTTTGTTTGTGCTTGA
TTTCAATGGTGATGTACAGGCCAGCGATGTGGATCATATGCGCCGGGAGATTACCGCCATTTTGCAGGTTGCCACCCAAG
ATGACGAAGTACTGGTTCGCCTGGAAAGTCCGGGTGGTCTGGTACACAGCTATGGGCTGGCATCCTCGCAGTTGCGCCGT
ATCCGTAACCAGGGCATCAAACTGACCGTCGCCGTGGACCAAGTGGCTGCTAGCGGAGGTTATATGATGGCCTGTATCGC
TGACCGTATTGTGGCGGCACCCTTCGCCATTATCGGCTCGATCGGTGTGGTCGCGCAGATTCCCAACTTTCACCGTTTGC
TGAAGAAAAACGATATTGATGTGGAACTGATGACTGCCGGTGAGTACAAACGCACCATGACCATGTTGGGCGAGAATACC
GAAAAGGGTCGGGCTAAATTTCAGGAAGAACTGGAAGAGACTCATCAATTGTTCAAGGGATTCGTCCGGGATAATCGCCG
TGGGCTCGATTTGGATAAGGTTGCGACTGGCGAACATTGGTTTGGCAGCCAAGCAAAGGAGCTGGGACTTGTCGATGAAA
TCATGACCAGCGACGAACTGTTACAAGTGCGCAAAGACAGCCAAACACTCTACCTAGTACAGTGGGAAGCCAAACGTAAG
CTGGGTGAGAAGCTGGGTTTCTCTCTAGAAGCAATGGCACATCGGGTGTTGGAAAAGTTTTGGCATCGTGGCAGCCAACG
TCAGATTCATTAG

Upstream 100 bases:

>100_bases
GATTACCGCAATGGCTCTGGCTTATGTAGAATCAGCCAGAGTTCGATTTCCGTGAATTGACTGGCGCTGGGCGCCAGGCC
CCTTGGAGAGTAGATAAACT

Downstream 100 bases:

>100_bases
TACCTTTACCGAACACTGCAAAGGAGTAGCTCATGACATTTAAGGCATTACAGACCCGCGAAACCGAGGCCGGTTACAGT
AACGTGCTGGTTGACCGCGA

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MIAFLMEYGMFLAKVATLVVAILFIFGGIAAAASRSRGKGDQDGELKVRHLNEEFDDLKESLEAEIIPEAQRKKAHKAKR
KQEKLEAKQKKKAGTEDKILPRLFVLDFNGDVQASDVDHMRREITAILQVATQDDEVLVRLESPGGLVHSYGLASSQLRR
IRNQGIKLTVAVDQVAASGGYMMACIADRIVAAPFAIIGSIGVVAQIPNFHRLLKKNDIDVELMTAGEYKRTMTMLGENT
EKGRAKFQEELEETHQLFKGFVRDNRRGLDLDKVATGEHWFGSQAKELGLVDEIMTSDELLQVRKDSQTLYLVQWEAKRK
LGEKLGFSLEAMAHRVLEKFWHRGSQRQIH

Sequences:

>Translated_350_residues
MIAFLMEYGMFLAKVATLVVAILFIFGGIAAAASRSRGKGDQDGELKVRHLNEEFDDLKESLEAEIIPEAQRKKAHKAKR
KQEKLEAKQKKKAGTEDKILPRLFVLDFNGDVQASDVDHMRREITAILQVATQDDEVLVRLESPGGLVHSYGLASSQLRR
IRNQGIKLTVAVDQVAASGGYMMACIADRIVAAPFAIIGSIGVVAQIPNFHRLLKKNDIDVELMTAGEYKRTMTMLGENT
EKGRAKFQEELEETHQLFKGFVRDNRRGLDLDKVATGEHWFGSQAKELGLVDEIMTSDELLQVRKDSQTLYLVQWEAKRK
LGEKLGFSLEAMAHRVLEKFWHRGSQRQIH
>Mature_350_residues
MIAFLMEYGMFLAKVATLVVAILFIFGGIAAAASRSRGKGDQDGELKVRHLNEEFDDLKESLEAEIIPEAQRKKAHKAKR
KQEKLEAKQKKKAGTEDKILPRLFVLDFNGDVQASDVDHMRREITAILQVATQDDEVLVRLESPGGLVHSYGLASSQLRR
IRNQGIKLTVAVDQVAASGGYMMACIADRIVAAPFAIIGSIGVVAQIPNFHRLLKKNDIDVELMTAGEYKRTMTMLGENT
EKGRAKFQEELEETHQLFKGFVRDNRRGLDLDKVATGEHWFGSQAKELGLVDEIMTSDELLQVRKDSQTLYLVQWEAKRK
LGEKLGFSLEAMAHRVLEKFWHRGSQRQIH

Specific function: Possible protease [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=351, Percent_Identity=52.1367521367521, Blast_Score=328, Evalue=4e-91,
Organism=Escherichia coli, GI1788064, Length=193, Percent_Identity=26.9430051813472, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 39400; Mature: 39400

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAFLMEYGMFLAKVATLVVAILFIFGGIAAAASRSRGKGDQDGELKVRHLNEEFDDLKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHH
SLEAEIIPEAQRKKAHKAKRKQEKLEAKQKKKAGTEDKILPRLFVLDFNGDVQASDVDHM
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH
RREITAILQVATQDDEVLVRLESPGGLVHSYGLASSQLRRIRNQGIKLTVAVDQVAASGG
HHHHHHHHHHHCCCCEEEEEECCCCCEEHHHCCCHHHHHHHHHCCCEEEEEEHHHHCCCC
YMMACIADRIVAAPFAIIGSIGVVAQIPNFHRLLKKNDIDVELMTAGEYKRTMTMLGENT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCC
EKGRAKFQEELEETHQLFKGFVRDNRRGLDLDKVATGEHWFGSQAKELGLVDEIMTSDEL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LQVRKDSQTLYLVQWEAKRKLGEKLGFSLEAMAHRVLEKFWHRGSQRQIH
HHHHCCCCEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIAFLMEYGMFLAKVATLVVAILFIFGGIAAAASRSRGKGDQDGELKVRHLNEEFDDLKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHH
SLEAEIIPEAQRKKAHKAKRKQEKLEAKQKKKAGTEDKILPRLFVLDFNGDVQASDVDHM
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH
RREITAILQVATQDDEVLVRLESPGGLVHSYGLASSQLRRIRNQGIKLTVAVDQVAASGG
HHHHHHHHHHHCCCCEEEEEECCCCCEEHHHCCCHHHHHHHHHCCCEEEEEEHHHHCCCC
YMMACIADRIVAAPFAIIGSIGVVAQIPNFHRLLKKNDIDVELMTAGEYKRTMTMLGENT
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCC
EKGRAKFQEELEETHQLFKGFVRDNRRGLDLDKVATGEHWFGSQAKELGLVDEIMTSDEL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LQVRKDSQTLYLVQWEAKRKLGEKLGFSLEAMAHRVLEKFWHRGSQRQIH
HHHHCCCCEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]